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Job DescriptionP00956
Confidence99.77%DateThu Jan 5 10:57:19 GMT 2012
Rank45Aligned Residues377
% Identity20%Templatec1f7uA_
PDB info PDB header:ligase/rnaChain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.......
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Query Sequence  RAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVE. . . . . . . . . . . . . .
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Template Sequence  SCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKD
Template Known Secondary structure 



SS





BTTS

BGGGTT
B

S


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   136...140.........150.........160.........170.........180.........190.........200.........210.....
 
   108.110......... 120.........130.........140.........150.....
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Query Sequence  . . . . . . . . . QEYGKPGEKFTA. . . . . . . . . . . . . . . . . . . . . . . AEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYL
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Template Sequence  PIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD. . . VYS
Template Known Secondary structure  STTSS
SST
TT


S...
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   216...220.........230.........240.........250.........260.........270.........280......... 290..
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  TMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNVNGPI
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Template Sequence  GESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGG

TT
TTGGG............................................
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   293......300.........310.........320........
 
   236...240.........250.........260. ........270.........280.........290.........300.........310....
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Query Sequence  SLVIWTTTPWTLPANRAISIAPDFDY. ALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFD
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Template Sequence  . . . . . . . . . . . . . . . . . . . FNKKLGKAIVQKSDGTTLYLTRDVGAAM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ...................T
TTT

TTS


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   329330.........340.........350......
 
   315....320.........330.........340.........350.........360.........370.........380.........390....
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Query Sequence  VPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGALL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   395....400.........410.........420.........430.........440.........450.........460.........470....
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Query Sequence  HVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPM
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   475....480.........490.........500.........510.........520.........530.........540.........550....
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Query Sequence  SLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGH
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Template Conservation  ........................................................................ 
      
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DRYEKYHF
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   357..360....
 
   555....560.........570.........580...... ...590.........600.........610.........
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Query Sequence  AADMYLEGSDQHRGWFMSSLMISTAMKGKAPY. RQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNK. . . . . . . . . . . . . .
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Template Sequence  DKMIYVIASQQD. LHAAQFFEILKQMGFEWAKDLQHVNFGMVQ. . . . . GMSTRKGTVVFLDNILEETKEKMHEVMKKNEN
Template Known Secondary structure  S

GGG.TT
GGGGG



.....S

GGGT


BT
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   365....370...... ...380.........390.........400...... ...410.........420.........430........
 
   620.........630.........640....... ..650.........660.........670.......
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Query Sequence  . . . . . . . . . . . . . . LGADILRLWVASTDYTGEMAVSDEILKR. . . . . . . . AADSYRRIRNTARFLLANLNGFDPAKDMVK
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Template Sequence  KYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERN. . ASGITQEKWINADF
Template Known Secondary structure  TT
S
SS
TT





SSSS..TTTS
TTS
G
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   439440.........450.........460.........470.........480.........490.........500.. .......510......
 
   678.680.........690.........700.........710.........720.........730.........740.. .......750....
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Query Sequence  PEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADS. . . VARRSCQTALYH
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Template Sequence  SLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT. HQVSSCY. . . . . DVLWVAGQTEELATARLALYGAARQ
Template Known Secondary structure  GG

STT

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   517..520.........530.........540.........550........ .560..... ....570.........580.........590
 
   755....760...
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Query Sequence  IAEALVRWM
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Template Sequence  VLYNGMRLL
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   591........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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