Job Description P65643 Confidence 10.28% Date Thu Jan 5 12:10:17 GMT 2012 Rank 77 Aligned Residues 51 % Identity 14% Template d2cjra1 SCOP info Nucleocapsid protein dimerization domain Nucleocapsid protein dimerization domain Coronavirus nucleocapsid protein Resolution 2.50

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	S	A	R	E	L	L	E	S	R	H	L	R	I	K	F	I	D	E	Q	G	R	L	F	V	D	D	E	Q	Q	Q	P	Q	P	V	H	G	L	T	S	S	D	E	H	P	Q	A	C	C	E	L	C	R	Q	P	V	A	K	K	P	D	T	L	T	H	L	S	A	E	K	M	V	A	K	S	D	P	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	P	S	A	S	A	F	F	G	M	S	R	I	G	M	E	V	T	P	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	W	L	T	Y	H	G	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	D	D	K	D	P	Q
Template Known Secondary structure		T	S									T	S								S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																					330	.	.	.	.	.	.	.	.																						.	340	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	F	R	A	V	L	D	S	T	I	A	L	A
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		F	K	D	N	.	.	V	I	L	L	N	K	H	I
Template Known Secondary structure						.	.								B
Template Predicted Secondary structure						.	.
Template SS confidence
		347	.	.	350			.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions