Job Description P65643 Confidence 9.35% Date Thu Jan 5 12:10:17 GMT 2012 Rank 85 Aligned Residues 82 % Identity 22% Template d16vpa_ SCOP info Conserved core of transcriptional regulatory protein vp16 Conserved core of transcriptional regulatory protein vp16 Conserved core of transcriptional regulatory protein vp16 Resolution 2.10

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.									.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.
Query Sequence		D	E	D	L	H	R	L	S	H	Q	P	L	R	Y	L	D	H	D	H	L	V	P	E	A	S	H	G	R	D	A	A	L	L	N	L	L	R	T	K	V	R	E	T	E	T	V	A	A	Q	V	F	I	T	R	S	F	E	V	L	R	P	D	I	L	Q	A	L	.	.	.	.	.	.	.	.	N	R	L	S	S
Query Conservation																																																																					.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																															.	.	.										.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Sequence		H	A	E	L	R	A	R	E	E	S	Y	R	T	V	L	.	.	.	.	.	.	.	.	.	.	A	N	F	C	S	A	L	Y	R	Y	L	R	A	S	V	R	Q	L	H	R	Q	A	H	M	R	G	R	D	R	D	.	.	.	L	G	E	M	L	R	A	T	I	A	D	R	Y	Y	R	E	T	A	R	L	A	R
Template Known Secondary structure																	.	.	.	.	.	.	.	.	.	.																									T	T					.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.											.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	Y	V	M	M	I	L	S	V	T	K	Q	P	L	T	V	K	Q	I	Q	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	F	L	H	L	Y	L	F	L	T	R	E	I	L	W	A	A	Y	A	E	Q	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions