Job Description P08506 Confidence 98.87% Date Wed Jan 25 15:20:14 GMT 2012 Rank 75 Aligned Residues 214 % Identity 17% Template c3tg9A_ PDB info PDB header:penicillin binding protein Chain: A: PDB Molecule:penicillin-binding protein; PDBTitle: the crystal structure of penicillin binding protein from bacillus2 halodurans Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.									.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	L	M	K	K	G	.	.	E	D	I	P	F	I	A	S	L	G	F	A	N	R	A	E	R	I	P	N	E	H	H	T	R	F	G	I	A	S	G	C	K	L	F	T	A	I	A	I	C	Q	L	V	E	A	G	K	L	S	F	D	T	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	.	.	T	S								S				T	T	T	T					T	T		B				G	G	G	G															T	S			T	T		B	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																																													.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	V	M	F	L	K	P	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	A	C	I	A	L	A	D	Y
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																					.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																					.	.	.
Template Sequence		.	S	D	W	L	D	A	P	F	P	N	V	T	I	H	H	L	L	T	H	T	.	.	.	S	G	V	P	D	Y	F	D	E	D	L	W	K	D	V	P	M	Y	H	L	R	R	L	K	D	F	L	P	L	F	Q	H	A	P	M	K	F	P	P	G	H	R	F	H	Y	N	N	A	G	F	I	L	L	G	L	V
Template Known Secondary structure		.	G	G	T		S	S			T	T		B						T	T		.	.	.	S					S					G	G	G	T	S		G	G	G			S	G	G	G	G	G	G	G	T	T	T	S				S		T	T	S
Template Predicted Secondary structure		.																					.	.	.
Template SS confidence
			79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		144					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																													.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure			.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	.	.	.	.	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	D	A	P	G	Q	F	S	T	A	R	D	M	A	L	L	G
Query Conservation			.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.												.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		V	E	S	V	S	G	V	T	F	Q	E	Y	V	E	A	N	.	.	V	F	Q	R	A	G	M	H	E	S	G	Y	F	A	F	D	T	L	P	A	K	T	A	L	G	Y	I	D	L	E	D	G	S	W	K	T	N	L	Y	S	L	P	V	I	G	G	S	D	G	G	A	Y	V	T	A	E	D	M	M	K	L	W
Template Known Secondary structure							S	S										.	.	T					T		T	T		B			B	G	G	G			S	S	B								T	T	S					S	T	T	T	S		S	B			S	S	S
Template Predicted Secondary structure																		.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		192	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		K	A	L	I	H	D	.	.	.	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	R	Q	P	N	R	N	R	L	L	W	S	S	N	L	N	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	N	L	V	A	S	A	T	Q	G	D	M	R	L	I	S	V	V	L	G	A	K	T	D	R
Query Conservation								.	.	.
Alig confidence								.	.	.																															.
Template Conservation																																									.
Template Sequence		L	A	L	M	R	H	E	L	L	N	E	T	Y	T	Q	K	L	L	T	P	H	V	H	C	E	D	D	D	Y	Y	G	Y	G	V	W	I	K	Q	Q	.	D	G	A	I	S	K	Y	H	V	M	G	Y	D	P	G	V	C	F	H	S	A	F	Y	P	T	S	N	G	I	V	V	V	C	A	N	Q	S	S	G	A
Template Known Secondary structure						T	T	S	S	S									T	S							T	T					S	S	S						.	T	T												T	T									T	T	T	T								S	B	S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	F	N	E	S	E	K	L	L	T	W	G	F
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		Y	.	.	.	D	V	M	A	A	I	E	A	L	F
Template Known Secondary structure			.	.	.								T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		319				320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions