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Job DescriptionP08506
Confidence99.13%DateWed Jan 25 15:20:14 GMT 2012
Rank57Aligned Residues226
% Identity23%Templatec3pbqA_
PDB info PDB header:hydrolase/antibioticChain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50...... ...60.........70.........80.........90.........
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Query Sequence  AWILMDYASGKVLAEG. . . . . . . . . . . . . . . . . . . . . NADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWA
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Template Sequence  SLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALAS. . . GRWKPSDIVDVYPGTLQ
Template Known Secondary structure  TTT
BS


TT

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BB
GGGGT...TS

TT

TTS
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   248.250.........260.........270.........280.........290.........300....... ..310.........320....
 
   100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP.
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Template Sequence  IGRYTIRDVS. . . . RNSRQLDLTG. . . . ILIKSSNVGISKIAFDIG. . . . . . AESIYSVMQQVGLGQ. . . . . DTGLGFPG
Template Known Secondary structure  TT
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S....TT

......TTTTS.....

S


TT
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   325....330.... .....340.... .....350.........360.. .......370....... ..380.....
 
   179180.........190.........200.........210........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQP. . . . . . . . . . . . . . . .
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Template Sequence  ERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALAND. GKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQV
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B



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TT
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   386...390.........400.........410.........420........ .430.........440.........450.........460....
 
   219220.........230.........240.... .....250.........260.. .......270.........280......
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Query Sequence  . . . NRNRLLWSSNLNVDGMKTGTTAGAGY. . NLVASATQGDMRLISVVL. . . . . . . GAKTDRIRFNESEKLLTWGFRFFE
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Template Sequence  VEAQGGVFRAQVPGYHAAGKSGTARKNAYRSLFAGFAPATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMN
Template Known Secondary structure  STTS
GGG
BTTB




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   465....470.........480.........490.........500.........510.........520.........530.........540....
 
   287..
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Query Sequence  TVT
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Template Sequence  VPP
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   555..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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