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Job DescriptionP08506
Confidence98.66%DateWed Jan 25 15:20:14 GMT 2012
Rank86Aligned Residues147
% Identity21%Templatec3o3vB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of clbp peptidase domain
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  SVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKP
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Template Sequence  VRQRFVYGVADVASQKAN. . . TLDTVYELGSMSKAFTGLVVQILIQEGRLRQGDDII. . . . . . . . . . TYLPEMRLNYQGK
Template Known Secondary structure  TTTT
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TT
B
GGGGTTS

TTSB..........
TT

TT
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   68.70.........80..... ....90.........100.........110.........120. ........130....
 
   116...120........ .130.........140.... .....150......
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Query Sequence  GDQVSVADLNKGV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IIQSGNDACIALADYV. . . . AGSQESFIGLMN
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Template Sequence  PASLTVADFLYHTSGLPFSTLARLENPMPGSAVAQQLRNENLLFAPGAKFSYASANYDVLGAVIENVTGKTFTEVIAER.
Template Known Secondary structure 


BTT
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STT
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TTS




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   135....140.........150.........160.........170.........180.........190.........200.........210...
 
   157..160.........170........ .180.........190.......
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Query Sequence  GYAKKLGLTNTTFQTVHGLDAP. . . . . . . . . . . . . . . . . . . . . . . . . . . GQFSTARDMALLGKALIHD
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Template Sequence  . LTQPLGMSATVAVKGDEIIVNKASGYKLGFGKPVLFHAPLARNHVPAAYIHSTLPDMEIWIDAWLHR
Template Known Secondary structure  .TT
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TTB


B

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STTT
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   214.....220.........230.........240.........250.........260.........270.........280
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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