Job Description P08506 Confidence 100.00% Date Wed Jan 25 15:20:14 GMT 2012 Rank 1 Aligned Residues 345 % Identity 100% Template c3it9B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacc; PDBTitle: crystal structure of penicillin-binding protein 6 (pbp6)2 from e. coli in apo state Resolution 2.10 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	S	V	D	A	R	A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G	S	S	V	M	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	S	V	D	A	R	A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G	S	S	V	M	F	L
Template Known Secondary structure						S	S	S							T	T	T								S	T	T	S		B			G	G	G															T	T	S	S		T	T							G	G	G		S	T	T		G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	G	Q	F	S	T	A	R	D	M	A	L	L	G	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	G	Q	F	S	T	A	R	D	M	A	L	L	G	K	A
Template Known Secondary structure			T	T															T															S	S															T	T		T	T		B			S	S	S					T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	H	D	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	R	Q	P	N	R	N	R	L	L	W	S	S	N	L	N	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	N	L	V	A	S	A	T	Q	G	D	M	R	L	I	S	V	V	L	G	A	K	T	D	R	I	R	F	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	H	D	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	R	Q	P	N	R	N	R	L	L	W	S	S	N	L	N	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	N	L	V	A	S	A	T	Q	G	D	M	R	L	I	S	V	V	L	G	A	K	T	D	R	I	R	F	N	E
Template Known Secondary structure												G	G	G							T	T						S		G	G	G	G		S	S	S											T	T												T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	K	L	L	T	W	G	F	R	F	F	E	T	V	T	P	I	K	P	D	A	T	F	V	T	Q	R	V	W	F	G	D	K	S	E	V	N	L	G	A	G	E	A	G	S	V	T	I	P	R	G	Q	L	K	N	L	K	A	S	Y	T	L	T	E	P	Q	L	T	A	P	L	K	K	G	Q	V	V	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	K	L	L	T	W	G	F	R	F	F	E	T	V	T	P	I	K	P	D	A	T	F	V	T	Q	R	V	W	F	G	D	K	S	E	V	N	L	G	A	G	E	A	G	S	V	T	I	P	R	G	Q	L	K	N	L	K	A	S	Y	T	L	T	E	P	Q	L	T	A	P	L	K	K	G	Q	V	V	G	T
Template Known Secondary structure																		S	S		T	T			S							S	B	S	S	S							G	G	G							T	T		G	G	G								S	S	S	S			S		B		T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	F	Q	L	N	G	K	S	I	E	Q	R	P	L	I	V	M	E	N	V	E	E	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	F	Q	L	N	G	K	S	I	E	Q	R	P	L	I	V	M	E	N	V	E	E	G	G
Template Known Secondary structure						S	S	S	S										S	S		B		B
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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