Job Description P08506 Confidence 98.93% Date Wed Jan 25 15:20:14 GMT 2012 Rank 70 Aligned Residues 211 % Identity 18% Template c3fwlA_ PDB info PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli Resolution 3.09 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.													.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	I	L	M	D	Y	A	S	G	K	V	L	A	.	.	.	.	.	.	.	.	.	.	.	.	E	G	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G	S
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																							.	.
Template Sequence		A	I	V	V	V	D	R	F	S	G	E	V	R	A	X	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	X	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	.	.	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P
Template Known Secondary structure								T	T	T		B							S	S	S	S	T	T		S	S		T	T	T	S						G	G	G	G										T	S		S	.	.	S			T	T													S	S	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.			.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		109	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		S	V	M	F	L	K	P	.	.	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	G	Q	F	S	T	A	R	D
Query Conservation									.	.
Alig confidence									.	.										.	.	.	.																		.	.	.	.	.	.
Template Conservation																				.	.	.	.																		.	.	.	.	.	.
Template Sequence		Q	N	D	D	R	R	Y	S	E	S	G	R	V	X	L	V	D	A	.	.	.	.	L	T	R	S	X	N	V	P	T	V	N	L	G	X	A	L	G	.	.	.	.	.	.	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	X	L	L	G	A	L	N	L	T	P	I	E
Template Known Secondary structure				T	T					T	T	S								.	.	.	.			T	T		S												.	.	.	.	.	.												T			G	G	G				S	T					T
Template Predicted Secondary structure																				.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.					.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.							.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																															.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	L	L	G	K	A	L	I	H	D	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	R	Q	P	N	R	N	R	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	S	N	L	N	V	D	G	M	K	T
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		V	A	Q	A	F	Q	T	I	A	S	G	.	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	X	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T
Template Known Secondary structure											T	T	.	S						B	S							S	S	S														S																		T	S	T	T								T	T	S
Template Predicted Secondary structure													.
Template SS confidence
		621	.	.	.	.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	T	A	G	A	G	Y	N	L	V	A	S	A	T	Q	G	D	M	R	L	I	S	V	V	L	G	A	K	T
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		G	T	T	N	N	N	V	D	T	W	F	A	G	I	.	.	D	G	S	T	V	T	I	T	W	V	G	R	D	N
Template Known Secondary structure					G	G	G	S								.	.		S	S										T	T
Template Predicted Secondary structure																.	.
Template SS confidence
		700	.	.	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions