Job Description P08506 Confidence 98.92% Date Wed Jan 25 15:20:14 GMT 2012 Rank 72 Aligned Residues 201 % Identity 23% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.											.	.	.	.	.	.	.
Template Conservation																																																														.	.	.											.	.	.	.	.	.	.
Template Sequence		T	V	V	V	L	D	A	R	T	G	E	I	L	A	L	A	N	T	P	A	Y	D	P	N	R	P	G	R	A	D	S	E	Q	R	R	N	R	A	V	T	D	X	I	E	P	G	S	A	I	K	P	F	V	I	A	K	A	L	D	A	.	.	.	G	K	T	D	L	N	E	R	L	N	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T		B								S				T	T	S		T	T															B			G	G	G	G												.	.	.	T	S	S		S	S					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.											.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	G	N	P	A	L	R	G	S	S	V	M	F	L	K	P	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	.
Query Conservation																																																																																	.
Alig confidence																													.	.	.	.																.	.	.	.	.	.																												.
Template Conservation																													.	.	.	.																.	.	.	.	.	.
Template Sequence		T	Q	P	Y	K	I	G	P	S	P	V	R	D	T	H	V	Y	P	S	L	D	V	R	G	I	X	Q	.	.	.	.	K	S	S	N	V	G	T	S	K	L	S	A	R	F	G	.	.	.	.	.	.	A	E	E	X	Y	D	F	Y	H	E	L	G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L
Template Known Secondary structure			S					T	T						S	S			S										.	.	.	.		T										T	T	S		.	.	.	.	.	.											T	T	T	T	S					S		T	T
Template Predicted Secondary structure																													.	.	.	.																.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360					.	.	.	.	.	.	.	.	.	370	.	.	.	.	.							.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
																					179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																			.	.	.	220	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	F	S	T	A	R	D	M	A	L	L	G	K	A	L	I	H	D	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	N	R	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		L	R	N	W	R	R	W	R	P	I	E	Q	A	T	X	S	F	G	Y	G	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	D	.	G	V	L	L	P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T	A	R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T
Template Known Secondary structure					G	G	G											T	T		S			B														T	T	.	T						B	S	B			S	S								S													T	T	T	S	T	T	S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		R	L	L	W	S	S	N	L	N	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	.	.	N	L	V	A	S	A	T	Q	G	D	M	R	L	I	S	V	V	L
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		G	T	A	G	A	V	D	G	F	D	V	G	A	K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V	I	V	A	V	T
Template Known Secondary structure			G	G	G			T	T	S																							S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions