Job Description P08506 Confidence 100.00% Date Wed Jan 25 15:20:14 GMT 2012 Rank 3 Aligned Residues 343 % Identity 54% Template c3a3jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pbp5; PDBTitle: crystal structures of penicillin binding protein 5 from2 haemophilus influenzae Resolution 2.15 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	E	A	P	S	V	D	A	R	A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G	S	S	V
Query Conservation
Alig confidence																																																																											.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		G	V	T	P	P	Q	I	T	A	Q	T	Y	V	L	M	D	Y	N	S	G	A	I	L	T	A	L	N	P	D	Q	R	Q	Y	P	A	S	L	T	K	M	M	T	S	Y	V	V	G	V	A	L	K	Q	G	K	I	H	N	T	D	M	V	T	I	G	E	S	A	W	G	R	N	F	P	.	.	.	D	S	S	K
Template Known Secondary structure										S	S							T	T	T								S	T	T	S		B			G	G	G															T	T	S	S		T	T							T	T	T		G	G	G		T	.	.	.	T	S
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	L	K	P	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	G	Q	F	S	T	A	R	D	M	A	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	F	L	D	L	N	T	Q	V	S	V	A	D	L	N	R	G	V	I	V	V	S	G	N	D	A	T	V	A	L	A	E	H	I	S	G	N	V	P	N	F	V	E	T	M	N	K	Y	V	Q	Q	F	G	L	K	N	T	N	F	T	T	P	H	G	L	D	D	P	N	Q	Y	S	S	A	R	D	M	A	I	I
Template Known Secondary structure						T	T																														S	S															T	T		S	S		B		S	S	S	S					T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		G	K	A	L	I	H	D	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	R	Q	P	N	R	N	R	L	L	W	S	S	N	L	N	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	N	L	V	A	S	A	.	T	Q	G	D	M	R	L	I	S	V	V	L	G	A	K	T	D	R	I
Query Conservation																																																														.
Alig confidence																																																														.
Template Conservation
Template Sequence		G	A	H	I	I	R	D	L	P	E	E	Y	K	I	Y	S	E	K	D	F	T	F	N	K	I	K	Q	P	N	R	N	G	L	L	W	D	K	T	I	N	V	D	G	M	K	T	G	H	T	S	Q	A	G	Y	N	L	V	A	S	A	T	T	S	N	N	M	R	L	I	S	V	V	M	G	V	P	T	Y	K	G
Template Known Secondary structure														G	G	G	G							T	T						S		G	G	G	G		T	T	S											T	T	T											T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	N	E	S	E	K	L	L	T	W	G	F	R	F	F	E	T	V	T	P	I	K	P	D	A	T	F	V	T	Q	R	V	W	F	G	D	K	S	E	V	N	L	G	A	G	E	A	G	S	V	T	I	P	R	G	Q	L	K	N	L	K	A	S	Y	T	L	T	E	P	Q	L	T	A	P	L	K	K	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	V	E	S	K	K	L	L	Q	W	G	F	A	N	F	E	T	F	K	T	L	E	A	G	K	E	I	S	E	Q	R	V	Y	Y	G	D	K	N	S	V	K	L	G	A	F	M	D	H	F	I	T	I	P	K	G	K	Q	S	E	V	K	A	R	Y	E	L	A	D	K	N	L	Q	A	P	L	A	K	G	Q
Template Known Secondary structure																									T	T										S	S	S	S	S							S	S								T	T		T	T	T								S	S	S	S			S		B		T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	T	I	D	F	Q	L	N	G	K	S	I	E	Q	R	P	L	I	V	M	E	N	V	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	G	K	V	V	Y	A	L	D	G	K	D	I	A	S	A	N	L	Q	V	M	N	D	V	G	E
Template Known Secondary structure											T	T												S		B
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions