Job Description P08506 Confidence 99.97% Date Wed Jan 25 15:20:14 GMT 2012 Rank 38 Aligned Residues 234 % Identity 18% Template c2wuqB_ PDB info PDB header:transcription Chain: B: PDB Molecule:beta-lactamase regulatory protein blab; PDBTitle: crystal structure of blab protein from streptomyces cacaoi Resolution 1.80 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G	S	S	V	M	F	L	K	P	G	D	Q	V	S
Query Conservation
Alig confidence																.																																																	.	.	.	.
Template Conservation																.																																																	.	.	.	.
Template Sequence		S	F	L	V	R	D	L	Y	T	G	E	E	L	G	.	I	D	P	D	T	E	L	P	T	A	S	L	V	K	L	P	L	A	L	A	T	L	E	R	I	R	L	G	E	V	D	G	A	Q	Q	I	E	V	A	P	G	R	I	T	T	P	G	P	.	.	.	.	T	G	L	S	R	F	R	H	P	A	R	V	A
Template Known Secondary structure								T	T	T						.		S	T	T						G	G	G	G															T	S	S		T	T												S	S	S		.	.	.	.		G	G	G	G		S	S
Template Predicted Secondary structure																.																																																	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.															.	180	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	F	S	T	A	R	D
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		V	D	D	L	L	Y	L	S	T	S	V	S	D	G	T	A	S	D	A	L	F	E	I	T	P	P	.	.	.	.	.	.	A	Q	V	E	Q	M	V	R	E	W	G	F	R	D	L	T	V	R	H	S	M	R	E	L	G	T	S	G	R	G	H	R	V	P	Q	L	D	V	A	R	A	N	T	G	T	A	R	A
Template Known Secondary structure												S													S			.	.	.	.	.	.										T	T			S					S		T	T					S	B	T	T		S	S	G	G	G	B	T	T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.							.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																															.	.																.	.
Query SS confidence																															.	.																.	.
Query Sequence		M	A	L	L	G	K	A	L	I	H	D	V	P	E	E	Y	A	I	H	K	E	K	E	F	T	F	N	K	I	.	.	R	Q	P	N	R	N	R	L	L	W	S	S	N	L	N	.	.	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	N	L	V	A	S	A	T	Q	G	D	M	R	L	I	S	V	V	L
Query Conservation																															.	.																.	.
Alig confidence																															.	.																.	.
Template Conservation
Template Sequence		F	V	D	L	L	E	A	L	W	A	P	V	L	T	G	P	A	L	P	P	E	P	A	A	R	L	R	E	L	M	A	A	N	L	L	R	H	R	L	A	P	D	F	A	S	D	A	A	T	W	S	S	K	T	G	T	L	L	N	L	R	H	E	V	G	V	V	E	H	A	D	G	Q	V	F	A	V	A	V	L
Template Known Secondary structure											G	G	G																				T					S	S	S						B	T	T											T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		263	.	.	.	.	.										.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.
Query Sequence		G	A	K	T	D	R	.	.	.	.	.	.	.	.	.	I	R	F	N	E	S	E	K	L	L	T	W	G	F	R	F	F	E
Query Conservation								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.													.
Template Conservation																													.
Template Sequence		T	E	S	Q	V	P	A	D	S	Q	P	G	A	E	A	L	M	A	Q	V	A	R	R	L	R	D	R	.	L	R	E	W	H
Template Known Secondary structure					S	S			S																				.
Template Predicted Secondary structure																													.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions