Job Description P08506 Confidence 98.99% Date Wed Jan 25 15:20:14 GMT 2012 Rank 66 Aligned Residues 225 % Identity 22% Template c2qz6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase; PDBTitle: first crystal structure of a psychrophile class c beta-2 lactamase Resolution 2.26 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.													.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	N	A	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L	R	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		A	G	L	S	V	A	V	I	Q	N	G	K	A	Q	Y	F	N	Y	G	V	A	N	K	D	S	K	Q	P	I	T	E	N	T	L	F	E	I	G	S	V	S	K	T	F	T	A	T	L	A	G	Y	A	L	A	N	G	K	L	K	L	S	D	P	A	S	.	.	.	.	.	.	Q	Y	L	P	A	L	R	G	D
Template Known Secondary structure		S									T	T									B	S		T	T	T			B			T	T		B				G	G	G															T	T	S			T	T	S	B	G	G	.	.	.	.	.	.	G	G		G	G	G	T	T	S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																													.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		S	S	V	M	F	L	K	P	G	D	Q	V	S	V	A	D	L	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	.	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence				.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation				.	.	.	.	.	.	.
Template Sequence		K	F	.	.	.	.	.	.	.	D	H	I	S	L	L	N	L	G	T	Y	T	A	G	G	L	P	L	Q	F	P	T	G	K	M	I	S	Y	Y	Q	H	W	K	P	A	F	A	P	G	T	Q	R	L	Y	S	N	P	S	I	G	L	F	G	H	L	A	A	Q	S	L	G	Q	P	F	E	K	L	M	E	Q	T
Template Known Secondary structure		G	G	.	.	.	.	.	.	.	G	S	S	B						T	T		S	S				S	S																S	S		T	T	T																			T	T	T	S									T
Template Predicted Secondary structure				.	.	.	.	.	.	.
Template SS confidence
		100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
			159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																									.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.							.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		.	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	P	G	Q	F	S	T	A	R	D	M	A	L	L	G	K	A	L	I	H	D	V	.	.	.	.	.	.	P	E	E	Y	A	I	H	K	E
Query Conservation		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	P	K	L	G	L	K	H	T	F	I	S	V	P	E	T	Q	M	S	L	Y	A	Q	G	Y	D	K	A	G	K	P	V	R	V	S	P	G	A	L	D	A	E	A	Y	G	I	K	T	S	T	S	D	L	I	H	Y	V	E	V	N	M	H	P	A	K	L	E	K	P	L	Q	Q	A	I	A	A	T	H	T
Template Known Secondary structure		T	T	G	G	G	T		S	S			S	S			G	G	G	G	G	G	B				B		T	T	S		B							T	T					T																			G	G	G	S												T	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.																															.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	F	T	F	N	K	I	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	R	N	R	L	L	W	S	S	N	L	N	V	D	G	M	K	T	G	T	T	A	G	A	G	Y	N	L	V	A	S	A	T	Q	G	D	M	R	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																																																	.	.
Template Sequence		G	Y	Y	T	V	D	G	M	T	Q	G	L	G	W	E	M	Y	P	Y	P	I	K	V	D	A	L	V	E	G	N	S	T	Q	M	A	M	E	P	H	K	V	N	W	L	T	P	P	Q	A	A	P	L	D	T	L	V	N	K	T	G	S	T	G	.	.	G	F	G	A	Y	V	A	Y	V	P	S	K	G	L	G
Template Known Secondary structure							T	T					S	S						S	S										T		S					S															S	S										S	.	.	S									T	T	T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		258	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		I	S	V	V	L	G	A	.	K	T	D	R	I	R	F	N	E	S	E	K	L	L	T
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		V	V	I	L	A	N	K	N	Y	P	N	A	E	R	V	K	A	A	H	A	I	L	S
Template Known Secondary structure							S	B
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions