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Job DescriptionP77234
Confidence76.84%DateThu Jan 5 12:26:39 GMT 2012
Rank96Aligned Residues168
% Identity12%Templatec1tnoI_
PDB info PDB header:transferaseChain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.. .......30.........40.........50........ .60.........70.......
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Query Sequence  IFTSSCCDNLSIDEIIERAEK. . GDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAE. . QGHCEAQYSLGQKYTEDKS
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Template Sequence  VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRS. . . . LQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWL. .
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   106...110.........120.........130.........140... ......150.........160.........170.........
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  RHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFF
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  WYKQAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQ
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   180.........190...
 
   238.240.........250.........260.........270.... .....280......... 290.........300......... 310.
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Query Sequence  GSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECN. . DATAWYNLAIMYHYG. . EGRPVDLRQALDLYRKVQSS. . GT
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Template Sequence  NQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHN
Template Known Secondary structure  TT
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   194.....200.........210.........220.........230.........240.........250.........260.........270...
 
   312.......320.
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Query Sequence  RDVSQEIRET
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Template Sequence  ESAWNYLKGI
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   274.....280...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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