Job Description P77234 Confidence 98.35% Date Thu Jan 5 12:26:39 GMT 2012 Rank 12 Aligned Residues 213 % Identity 17% Template c1fchB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5 Resolution 2.20 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure															.	.																																					.	.
Query SS confidence															.	.																																					.	.
Query Sequence		N	L	S	I	D	E	I	I	E	R	A	E	K	.	.	G	D	C	E	A	Q	Y	I	V	G	F	Y	Y	N	R	D	S	A	I	D	S	P	D	D	E	K	A	F	Y	W	L	K	L	A	A	E	.	.	Q	G	H	C	E	A	Q	Y	S	L	G	Q	K	Y	T	E	D	K	S	R	H	K	D	N	E	Q	A
Query Conservation															.	.																																					.	.
Alig confidence															.	.																.	.	.	.	.																	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		P	N	A	V	L	L	F	E	A	A	V	Q	Q	D	P	K	H	M	E	A	W	Q	Y	L	G	T	T	Q	A	E	.	.	.	.	.	N	E	Q	E	L	L	A	I	S	A	L	R	R	C	L	E	L	K	P	D	N	Q	T	A	L	M	A	L	A	V	S	F	T	N	E	S	L	Q	R	Q	A	C	E	I	L
Template Known Secondary structure																T	T															.	.	.	.	.	T	T																	T	T																T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.						.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	W	L	K	K	A	A	L	Q	G	H	T	F	A	S	N	A	L	G	W	T	L	D	R	G	E	A	P	N	Y	K	E	A	V	V	W	Y	Q	I	A	A	E	S	G	M	S	Y	A	Q	N	N	L	G	W	M	Y	R	N	G	N	G	V	A	K	D	Y	A	L	A	F	F	W	Y	K	Q	A	A	L	Q
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	W	L	R	Y	T	P	A	Y	A	H	L	V	T	P	R	I	L	G	S	L	L	S	D	S	L	F	L	E	V	K	E	L	F	L	A	A	V	R	L	D	P	T	S	I	D	P	D	V	Q	C	G	L	G	V	L	F	N	L	S	G	E	Y	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	S	T	T	T	G	G	G	S					S																								T	T	S																	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	S	D	A	Q	N	N	L	A	D	L	Y	E	D	G	K	G	V	A	Q	N	K	T	L	A	A	F	W	Y	L	K	S	A	Q	Q	G	N	R	H	A	Q	F	Q	I	A	W	D	Y	N	A	G	E	G	V	D	Q	D	Y	K	Q	A	M	Y	W	Y	L	K	A	A	A	Q	G	S	V	G	A	Y	V	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	C	F	T	A	A	L	S	V	R	P	N	D	Y	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		I	G	Y	M	Y	K	H	G	Q	G	V	E	K	D	Y	Q	A	A	F	E	W	F	T	K	A	A	E	C	N	.	.	D	A	T	A	W	Y	N	L	A	I	M	Y	H	Y	G	E	G	R	P	V	D	L	R	Q	A	L	D	L	Y	R	K	V	Q	S
Query Conservation																															.	.
Alig confidence																															.	.															.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		L	W	N	K	L	G	A	T	L	A	N	G	N	Q	S	E	E	A	V	A	A	Y	R	R	A	L	E	L	Q	P	G	Y	I	R	S	R	Y	N	L	G	I	S	C	I	N	.	.	.	.	L	G	A	H	R	E	A	V	E	H	F	L	E	A	L	N
Template Known Secondary structure													T	T																	T	T															.	.	.	.	T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.					.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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