Job Description P0A6C1 Confidence 100.00% Date Thu Jan 5 11:02:47 GMT 2012 Rank 16 Aligned Residues 237 % Identity 16% Template d1k77a_ SCOP info TIM beta/alpha-barrel Xylose isomerase-like Hypothetical protein YgbM (EC1530) Resolution 1.63

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		G	L	A	N	A	A	I	R	A	A	E	I	D	A	T	A	F	A	L	F	T	K	N	Q	R	Q	W	R	A	A	P	L	T	T	Q	T	I	D	E	F	K	A	A	C	E	K	Y	H	Y	T	S	A	Q	I	L	P	H	D	S	Y	L	.	.	.	I	N	L	G	H	P	V	T	E	A	L	E	K	S	R	D
Query Conservation																																																															.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	I	E	R	F	A	A	A	R	K	A	G	F	D	A	V	E	F	L	F	P	Y	N	Y	S	.	.	.	.	.	.	.	.	.	.	T	L	Q	I	Q	K	Q	L	E	Q	N	H	L	T	L	A	L	F	N	T	A	P	G	D	I	N	A	G	E	W	G	L	S	A	L	P	G	R	E	H	E	A	H	A
Template Known Secondary structure			G	G	G									T		S					S			T	T	S		.	.	.	.	.	.	.	.	.	.											T	T													G	G	G	T		S		S	T	T		T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.											.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																.	.															.	.
Query SS confidence																																																.	.															.	.
Query Sequence		A	F	I	D	E	M	Q	R	C	E	Q	L	G	L	S	L	L	N	F	H	P	G	S	H	L	M	Q	I	S	E	E	D	C	L	A	R	I	A	E	S	I	N	I	A	L	D	.	.	K	T	Q	G	V	T	A	V	I	E	N	T	A	G	.	.	Q	G	S	N	L	G	F	K	F	E	H	L	A	A	I	I
Query Conservation																																																.	.															.	.
Alig confidence																																																.	.															.	.
Template Conservation
Template Sequence		D	I	D	L	A	L	E	Y	A	L	A	L	N	C	E	Q	V	H	V	X	A	G	V	V	P	A	G	E	D	A	E	R	Y	R	A	V	F	I	D	N	I	R	Y	A	A	D	R	F	A	P	H	G	K	R	I	L	V	E	A	L	S	P	G	V	K	P	H	Y	L	F	S	S	Q	Y	Q	A	L	A	I	V
Template Known Secondary structure													T	T		S								B			T	T	S																					G	G	G	T										T	T	T	S	T	T	B	S			S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	E	D	K	S	R	V	G	V	C	I	D	T	C	H	A	F	A	A	G	Y	D	L	R	T	P	A	E	C	E	K	T	F	A	D	F	A	R	T	V	G	F	K	Y	L	R	G	M	H	L	N	D	A	K	S	T	F	G	S	R	V	D	R	H	H	S	L	G	E	G	N	I	G	H	D	A	F	R
Query Conservation
Alig confidence						.																		.	.	.	.	.	.												.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation						.																		.	.	.	.	.	.												.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		E	E	V	A	.	R	D	N	V	F	I	Q	L	D	T	F	H	A	Q	K	V	D	.	.	.	.	.	.	G	N	L	T	H	L	I	R	D	Y	A	.	.	.	.	.	G	K	Y	A	H	V	Q	I	A	G	L	P	D	.	.	.	.	.	.	.	.	R	H	E	P	D	D	G	E	I	N	Y	P	W	L	F
Template Known Secondary structure						.		T	T														T	.	.	.	.	.	.										T	T	.	.	.	.	.	T	S									T	T	T	.	.	.	.	.	.	.	.				S	S	S	S	S	S
Template Predicted Secondary structure						.																		.	.	.	.	.	.												.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	M	Q	D	D	R	F	D	G	I	P	L	I	L	E	T	I	N	P	D	I	W	A	E	E	I	A	W	L	K	A	Q	Q	T
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		R	L	F	D	E	V	G	Y	Q	G	.	W	I	G	C	E	Y	K	P	R	G	L	T	E	E	G	L	G	W	F	D	A	W	R	G
Template Known Secondary structure							T	T			S	.									S	S		T	G	G	G	T
Template Predicted Secondary structure												.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions