Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6C1
Confidence66.10%DateThu Jan 5 11:02:47 GMT 2012
Rank137Aligned Residues129
% Identity14%Templated1ji1a3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20... ......30. ........40.........50......... 60........ .70..
Predicted Secondary structure 
.



............













....

..


.
Query SS confidence 










.







. . . . . . . . . . . .



























. . . .








. .



.
Query Sequence  GLANAAIRAAE. IDATAFAL. . . . . . . . . . . . FTKNQRQWRAAPLTTQTIDEFKAACEKY. . . . HYTSAQILP. . HDSY.
Query Conservation   
      
  . 
   


............                        
   ....

       ..    .
Alig confidence 










.







............



























....








..



.
Template Conservation 

  




   


  
 
 

       

   
   

   

 



 

  

      

 



 
 

 
  
Template Sequence  GIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDS
Template Known Secondary structure  TTTT


S


SSSS

S
S
TTT


SSSSS



SB

TT
Template Predicted Secondary structure 











































Template SS confidence 















































































   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   73......80.........90...... ...100....
Predicted Secondary structure  ..............................................







..



Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .























. .







Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LINLGHPVTEALEKSRDAFIDEMQ. . RCEQLGLS
Query Conservation  ..............................................   
 
 
   
          
 .. 
  

  
Alig confidence  ..............................................























..







Template Conservation                                                 

       
   
   
      
     


Template Sequence  HPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVD
Template Known Secondary structure  STTT
TT

SSS

TTT
TT
TTGGGB
TTT
TTBBB

STT
TTSTTSSTTT


Template Predicted Secondary structure 






















































Template SS confidence 















































































   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   105....110.........120.........130.........140.
Predicted Secondary structure 













Query SS confidence 




































Query Sequence  LLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT
Query Conservation   
                       
           
Alig confidence 




































Template Conservation 


 
    
                           
Template Sequence  GWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVN
Template Known Secondary structure  TTGGG
BSTT


SS
Template Predicted Secondary structure 














Template SS confidence 




































   352.......360.........370.........380........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions