Job Description P0A6C1 Confidence 100.00% Date Thu Jan 5 11:02:47 GMT 2012 Rank 18 Aligned Residues 248 % Identity 14% Template c3ngfA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.
Predicted Secondary structure															.	.	.																																																													.	.	.
Query SS confidence															.	.	.																																																													.	.	.
Query Sequence		M	K	Y	I	G	A	H	V	S	A	A	G	G	.	.	.	L	A	N	A	A	I	R	A	A	E	I	D	A	T	A	F	A	L	F	T	K	N	Q	R	Q	W	R	A	A	P	L	T	T	Q	T	I	D	E	F	K	A	A	C	E	K	Y	H	Y	T	S	A	Q	I	L	P	H	D	S	Y	L	.	.	.	I
Query Conservation															.	.	.																																																													.	.	.
Alig confidence															.	.	.																										.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		M	P	R	F	A	A	N	L	S	T	M	F	N	E	V	P	F	L	E	R	F	R	L	A	A	E	A	G	F	G	G	V	E	F	L	F	P	Y	D	F	D	.	.	.	.	.	.	.	.	.	.	A	D	V	I	A	R	E	L	K	Q	H	N	L	T	Q	V	L	F	N	M	P	P	G	D	W	A	A	G	E
Template Known Secondary structure									T	T	T	S		T	T	S												T	T		S					S			T	T	S		.	.	.	.	.	.	.	.	.	.											T	T											S		T	T	T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.											.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.			150
Predicted Secondary structure																																																															.	.															.	.
Query SS confidence																																																															.	.															.	.
Query Sequence		N	L	G	H	P	V	T	E	A	L	E	K	S	R	D	A	F	I	D	E	M	Q	R	C	E	Q	L	G	L	S	L	L	N	F	H	P	G	S	H	L	M	Q	I	S	E	E	D	C	L	A	R	I	A	E	S	I	N	I	A	L	D	.	.	K	T	Q	G	V	T	A	V	I	E	N	T	A	G	.	.	Q
Query Conservation																																																															.	.															.	.
Alig confidence																																												.																			.	.															.	.
Template Conservation																																												.
Template Sequence		R	G	M	A	A	I	S	G	R	E	Q	E	F	R	D	N	V	D	I	A	L	H	Y	A	L	A	L	D	C	R	T	L	H	A	M	S	G	I	T	E	G	L	.	D	R	K	A	C	E	E	T	F	I	E	N	F	R	Y	A	A	D	K	L	A	P	H	G	I	T	V	L	V	E	P	L	N	T	R	N	M
Template Known Secondary structure			B		T	T		T	T																			T	T								B		B		T	T	S	.																					G	G	G	T										T	T	T	S
Template Predicted Secondary structure																																												.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	N	L	G	F	K	F	E	H	L	A	A	I	I	D	G	V	E	D	K	S	R	V	G	V	C	I	D	T	C	H	A	F	A	A	G	Y	D	L	R	T	P	A	E	C	E	K	T	F	A	D	F	A	R	T	V	G	F	K	Y	L	R	G	M	H	L	N	D	A	K	S	T	F	G	S	R	V	D	R
Query Conservation
Alig confidence																					.																		.	.	.	.	.	.												.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																					.																		.	.	.	.	.	.												.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		P	G	Y	F	I	V	H	Q	L	E	A	V	G	L	V	K	R	V	N	.	R	P	N	V	A	V	Q	L	D	L	Y	H	A	Q	I	M	D	.	.	.	.	.	.	G	D	L	T	R	L	I	E	K	M	N	.	.	.	.	.	G	A	F	S	H	V	Q	I	A	S	V	P	D	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	B	S																.		T	T														T	.	.	.	.	.	.										T	T	.	.	.	.	.	T	S									T	T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																		.	.	.	.	.	.												.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	S	L	G	E	G	N	I	G	H	D	A	F	R	W	I	M	Q	D	D	R	F	D	G	I	P	L	I	L	E	T	I	N	P	D	I	W	A	E	E	I	A	W	L	K	A	Q	Q	T	E
Query Conservation
Alig confidence																											.																						.
Template Conservation																											.																						.
Template Sequence		R	H	E	P	D	E	G	E	L	N	Y	P	Y	L	F	S	V	L	E	S	V	G	Y	R	G	.	W	V	G	C	E	Y	N	P	R	G	K	T	E	S	G	L	A	W	F	A	P	.	Y	R	D
Template Known Secondary structure					T	T	S	S	S													T	T			S	.									S	S	S	G	G	G	G	G	G	G	G	G	G	.	G
Template Predicted Secondary structure																											.																						.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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