Job Description P0A6C1 Confidence 92.61% Date Thu Jan 5 11:02:47 GMT 2012 Rank 57 Aligned Residues 208 % Identity 13% Template c2cw6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria Resolution 2.10 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.												.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	W	R	A	A	P	L	T	T	Q	T	I	D	E	F	K	A	A	C	E	K	Y	H	Y	T	S	A	Q	I	L	P	H	D	S	Y	L	I	N	L	G	H	P	V	T	E	A	L	E	K	S	R	D	A	F	.	.	.	.	.	.	.	.	.	.	.	I	D	E	M	Q	R	C	E	Q	L	G	L	S	L	L
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	E	K	N	I	V	S	T	P	V	K	I	K	L	I	D	M	L	S	E	A	G	L	S	V	I	E	T	T	S	F	V	S	P	K	W	V	P	Q	M	G	D	H	T	E	V	L	K	G	I	Q	K	F	P	G	I	N	Y	P	V	L	T	P	N	L	K	G	F	E	A	A	V	A	A	G	A	K	E	V
Template Known Secondary structure			T		S	S																	T	T		S										T	T	T		G	G	G	T	T								S				T	T		B							S										T	T		S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		107	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																																																										.	.
Query SS confidence										.	.	.	.	.	.																																																										.	.
Query Sequence		N	F	H	P	G	S	H	L	.	.	.	.	.	.	M	Q	I	S	E	E	D	C	L	A	R	I	A	E	S	I	N	I	A	L	D	K	T	Q	G	V	T	A	V	I	E	N	T	A	G	Q	G	S	N	L	G	F	K	F	E	H	L	A	A	I	I	D	G	V	E	D	K	.	.	S	R	V	G	V	C	I
Query Conservation										.	.	.	.	.	.																																																										.	.
Alig confidence										.	.	.	.	.	.																																																										.	.
Template Conservation
Template Sequence		V	I	F	G	A	A	S	E	L	F	T	K	K	N	I	N	C	S	I	E	E	S	F	Q	R	F	D	A	I	L	K	A	A	Q	S	A	N	I	S	V	R	G	Y	V	S	C	A	L	G	C	P	Y	E	G	K	I	S	P	A	K	V	A	E	V	T	K	K	F	Y	S	M	G	C	Y	E	I	S	L	G	D
Template Known Secondary structure							S									T	S	S		T	T	T															T	T									S	T	T		B	T	T	T	B	S																T	T		S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.											.	.	.	.	.	.	230	.	.	.	.	.	.											.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	C	H	A	F	A	A	G	Y	D	L	R	T	P	A	E	C	E	K	T	F	A	D	F	A	R	T	V	G	F	K	Y	L	R	G	M	H	L	N	D	A	K	S	T	.	.	.	.	.	.	.	.	.	.	F	G	S	R	V	D	R	H	H	S	L	G	E	.	.	.	.	.	.	.	.	.	.	G	N
Query Conservation																																															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																					.											.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.																					.
Template Sequence		T	I	G	V	G	T	.	.	.	.	.	.	.	.	P	G	I	M	K	D	M	L	S	A	V	M	Q	E	V	P	L	A	A	L	.	A	V	H	C	H	D	T	Y	G	Q	A	L	A	N	T	L	M	A	L	Q	M	G	V	S	V	V	D	S	S	V	A	G	L	G	G	C	P	Y	A	Q	G	A	S	G	N
Template Known Secondary structure		T	T					.	.	.	.	.	.	.	.															S		G	G	G		.					B		T	T	S												T	T							B	T	T	S					T	T	S	S	S				B
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																					.
Template SS confidence
		205	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	H	D	A	F	R	W	I	M	Q	D	D	R	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	T	E	D	L	V	Y	M	L	E	G	L	G	I	H
Template Known Secondary structure			B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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