Return to main results Retrieve Phyre Job Id

Job DescriptionP25516
Confidence100.00%DateThu Jan 5 11:41:52 GMT 2012
Rank11Aligned Residues178
% Identity20%Templated1l5ja2
SCOP infoThe "swivelling" beta/beta/alpha domain LeuD/IlvD-like LeuD-like
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   655....660.........670.........680........ .690.........700.........710.........720.........730.
Predicted Secondary structure 



























...

















Query SS confidence 

































. . .










































Query Sequence  PVEDIHGARILAMLGDSVTTDHISPAGSIKPDSP. . . AGRYLQGRGVERKDFNSYGSRRGNHEVMMRGTFANIRIRNEMV
Query Conservation          


   

 









 
   
 ...

  
   
    


 
  



 


 








 
   
Alig confidence 










.





















...


























................
Template Conservation   


 
 
 
 .
 



 

 



  
  
    

   
            

      

................
Template Sequence  ALAEKLTVTVF. KVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQI. . . . . . . . . . . . . . . .
Template Known Secondary structure 


S
.S
GGGGGGTTSGGGTT
S
BTTB

SBTTTB
S................
Template Predicted Secondary structure 



.































................
Template SS confidence 















































































   161........170. ........180.........190.........200.........210.........220...
 
   732.......740.........750.........760.........770.........780.... .....790.........
Predicted Secondary structure 

























............


Query SS confidence 




















































. . . . . . . . . . . .














Query Sequence  PGVEGGMTRHLPDSDVVSIYDAAMRYKQEQTPLAVIAGKEYGSGSSRDWAAKG. . . . . . . . . . . . PRLLGIRVVIAESFE
Query Conservation      
  
          
 
 
  
   
   




 


 




 

  ............   


 



 

 
Alig confidence  .......................








.



















............














Template Conservation  .......................         .
   
   
 



  
            
      

  


 


Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . EALQQKGFP. LAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIA
Template Known Secondary structure  .......................TTSS
.S


TSTT


Template Predicted Secondary structure  .......................




.





















Template SS confidence 















































































   224.....230.. .......240.........250.........260.........270.........
 
   800.........810.........820.........830.........840.........850.........860.........870.........
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  RIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEKIDIGDLQNLQPGATVPVTLTRADGSQEVVPCRCRIDTATELTYYQND
Query Conservation 







  




 
        
 
 
 
   
     
 

  
   
    
            
  
      
Alig confidence 























......










.........












..














Template Conservation 


  
  
 
 


         ......

 
 

    ......... 
 
   

    ..         
 
 

Template Sequence  PIFFNTMEDAGALPIEVDVSNLNM. . . . . . GDVIDVYPYKG. . . . . . . . . EVRNHETGELLAT. . FELKTDVLIDEVRAG
Template Known Secondary structure  TT



TT

T......T
TTTT.........TTT

..


S
TT
Template Predicted Secondary structure 







......




.........




..




Template SS confidence 















































































   280.........290.........300... ......310.... .....320....... ..330.........340..
 
   880.........890
Predicted Secondary structure 
Query SS confidence 










Query Sequence  GILHYVIRNML
Query Conservation 


  
     
Alig confidence 










Template Conservation 
 

 
  
 
Template Sequence  GRIPLIIGRGL
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 










   343......350...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions