Job Description P25516 Confidence 100.00% Date Thu Jan 5 11:41:52 GMT 2012 Rank 1 Aligned Residues 878 % Identity 52% Template c2b3yB_ PDB info PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1) Resolution 1.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	L	R	E	A	S	K	D	T	L	Q	A	K	D	K	T	Y	H	Y	Y	S	L	P	L	A	A	K	S	L	G	D	I	T	R	L	P	K	S	L	K	V	L	L	E	N	L	L	R	W	Q	D	G	N	S	V	T	E	E	D	I	H	A	L	A	G	W	L	K	N	A	H	A	D	R	E	I	A	Y	R
Query Conservation
Alig confidence																														.	.
Template Conservation																														.	.
Template Sequence		S	N	P	F	A	H	L	A	E	P	L	D	P	V	Q	P	G	K	K	F	F	N	L	N	K	L	E	D	.	.	S	R	Y	G	R	L	P	F	S	I	R	V	L	L	E	A	A	I	R	N	C	D	E	F	L	V	K	K	Q	D	I	E	N	I	L	H	W	N	V	T	Q	H	K	N	I	E	V	P	F	K
Template Known Secondary structure				T	T	G	G	G				S		T	T	S	T	T						G	G	G	G			.	.	T	T	G	G	G	S														T			S	S	S	S										T					T	T	T	T
Template Predicted Secondary structure																														.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	R	V	L	M	Q	D	F	T	G	V	P	A	V	V	D	L	A	A	M	R	E	A	V	K	R	L	G	G	D	T	A	K	V	N	P	L	S	P	V	D	L	V	I	D	H	S	V	T	V	D	R	F	G	D	D	E	A	F	E	E	N	V	R	L	E	M	E	R	N	H	E	R	Y	V	F	L	K	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	R	V	I	L	Q	D	F	T	G	V	P	A	V	V	D	F	A	A	M	R	D	A	V	K	K	L	G	G	D	P	E	K	I	N	P	V	C	P	A	D	L	V	I	D	H	S	I	Q	V	D	F	N	R	R	A	D	S	L	Q	K	N	Q	D	L	E	F	E	R	N	R	E	R	F	E	F	L	K	W
Template Known Secondary structure			S																										T	T			G	G	G		S		S	S								S	S				S	S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Q	A	F	S	R	F	S	V	V	P	P	G	T	G	I	C	H	Q	V	N	L	E	Y	L	G	K	A	V	W	S	E	L	Q	D	G	E	W	I	A	Y	P	D	T	L	V	G	T	D	S	H	T	T	M	I	N	G	L	G	V	L	G	W	G	V	G	G	I	E	A	E	A	A	M	L	G	Q	P	V
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		G	S	Q	A	F	H	N	M	R	I	I	P	P	G	S	G	I	I	H	Q	V	N	L	E	Y	L	A	R	V	V	F	D	Q	.	.	.	.	D	G	Y	Y	Y	P	D	S	L	V	G	T	D	S	H	T	T	M	I	D	G	L	G	I	L	G	W	G	V	G	G	I	E	A	E	A	V	M	L	G	Q	P	I
Template Known Secondary structure						S	T	T						T	T	S										T	T			S					.	.	.	.	T	T										S	S	G	G	G	G	G	G	G	G	G	T																T	T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	L	I	P	D	V	V	G	F	K	L	T	G	K	L	R	E	G	I	T	A	T	D	L	V	L	T	V	T	Q	M	L	R	K	H	G	V	V	G	K	F	V	E	F	Y	G	D	G	L	D	S	L	P	L	A	D	R	A	T	I	A	N	M	S	P	E	Y	G	A	T	C	G	F	F	P	I	D	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M	V	L	P	Q	V	I	G	Y	R	L	M	G	K	P	H	P	L	V	T	S	T	D	I	V	L	T	I	T	K	H	L	R	Q	V	G	V	V	G	K	F	V	E	F	F	G	P	G	V	A	Q	L	S	I	A	D	R	A	T	I	A	N	M	C	P	E	Y	G	A	T	A	A	F	F	P	V	D	E	V
Template Known Secondary structure															S				T	T																				T	T							S	T	T	T	T	T	S											T					T		S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		T	L	D	Y	M	R	L	S	G	R	S	E	D	Q	V	E	L	V	E	K	Y	A	K	A	Q	G	M	W	R	N	.	.	.	P	G	D	E	P	I	F	T	S	T	L	E	L	D	M	N	D	V	E	A	S	L	A	G	P	K	R	P	Q	D	R	V	A	L	P	D	V	P	K	A	F	A	A	S	N	E	L
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		S	I	T	Y	L	V	Q	T	G	R	D	E	E	K	L	K	Y	I	K	K	Y	L	Q	A	V	G	M	F	R	D	F	N	D	P	S	Q	D	P	D	F	T	Q	V	V	E	L	D	L	K	T	V	V	P	C	C	S	G	P	K	R	P	Q	D	K	V	A	V	S	D	M	K	K	D	F	E	S	C	L	G	A
Template Known Secondary structure									T	T																	T					T	T		G	G	G					S							G	G	G								S	S		T	T					G	G	G											S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		400	.	.							.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		E	V	N	.	.	.	.	.	.	A	T	H	K	D	R	Q	P	V	D	Y	V	M	N	G	H	Q	Y	Q	L	P	D	G	A	V	V	I	A	A	I	T	S	C	T	N	T	S	N	P	S	V	L	M	A	A	G	L	L	A	K	K	A	V	T	L	G	L	K	R	Q	P	W	V	K	A	S	L	A	P	G	S
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		K	Q	G	F	K	G	F	Q	V	A	P	E	H	H	N	D	H	K	T	F	I	Y	D	N	T	E	F	T	L	A	H	G	S	V	V	I	A	A	I	T	S	C	T	N	T	S	N	P	S	V	M	L	G	A	G	L	L	A	K	K	A	V	D	A	G	L	N	V	M	P	Y	I	K	T	S	L	S	P	G	S
Template Known Secondary structure			S	B	T	T	B					G	G	G	T	T								T	T							T	T	B													T																		T	T					T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	S	D	Y	L	A	K	A	K	L	T	P	Y	L	D	E	L	G	F	N	L	V	G	Y	G	C	T	T	C	I	G	N	S	G	P	L	P	D	P	I	E	T	A	I	K	K	S	D	L	T	V	G	A	V	L	S	G	N	R	N	F	E	G	R	I	H	P	L	V	K	T	N	W	L	A	S	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	V	T	Y	Y	L	Q	E	S	G	V	M	P	Y	L	S	Q	L	G	F	D	V	V	G	Y	G	C	M	T	C	I	G	N	S	G	P	L	P	E	P	V	V	E	A	I	T	Q	G	D	L	V	A	V	G	V	L	S	G	N	R	N	F	E	G	R	V	H	P	N	T	R	A	N	Y	L	A	S	P	P
Template Known Secondary structure											T	T									T			B			S	S		G	G	G	G	T																	T								S	S	S				T	T	S	S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		L	V	V	A	Y	A	L	A	G	N	M	N	I	N	L	A	S	E	P	I	G	H	D	R	K	G	D	P	V	Y	L	K	D	I	W	P	S	A	Q	E	I	A	R	A	V	E	Q	.	V	S	T	E	M	F	R	K	E	Y	A	E	V	F	E	G	T	A	E	W	K	G	I	N	V	T	R	S	D	T	Y	G
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		L	V	I	A	Y	A	I	A	G	T	I	R	I	D	F	E	K	E	P	L	G	V	N	A	K	G	Q	Q	V	F	L	K	D	I	W	P	T	R	D	E	I	Q	A	V	E	R	Q	Y	V	I	P	G	M	F	K	E	V	Y	Q	K	I	E	T	V	N	E	S	W	N	A	L	A	T	P	S	D	K	L	F	F
Template Known Secondary structure											B	S				T	T	T	S		S				T	T	T																																	T	T	T	T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	E	D	S	T	Y	I	R	L	S	P	F	F	D	E	M	Q	A	T	P	A	P	V	E	D	I	H	G	A	R	I	L	A	M	L	G	D	S	V	T	T	D	H	I	S	P	A	G	S	I	K	P	D	S	P	A	G	R	Y	L	Q	G	R	G	V	E	R	K	D	F	N	S	Y	G	S	R	R	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	N	S	K	S	T	Y	I	K	S	P	P	F	F	E	N	L	T	L	D	L	Q	P	P	K	S	I	V	D	A	Y	V	L	L	N	L	G	D	S	V	T	T	D	H	I	S	P	A	G	N	I	A	R	N	S	P	A	A	R	Y	L	T	N	R	G	L	T	P	R	E	F	N	S	Y	G	S	R	R	G	N
Template Known Secondary structure				T	T		S	S					S	T	T	T	T			S	S																		S			B					S			S				S	S	S									T	T			G	G	G				T	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	V	M	M	R	G	T	F	A	N	I	R	I	R	N	E	M	V	P	G	V	E	G	G	M	T	R	H	L	P	D	S	D	V	V	S	I	Y	D	A	A	M	R	Y	K	Q	E	Q	T	P	L	A	V	I	A	G	K	E	Y	G	S	G	S	S	R	D	W	A	A	K	G	P	R	L	L	G	I	R	V
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		D	A	V	M	A	R	G	T	F	A	N	I	R	L	L	N	R	F	L	N	K	.	Q	A	P	Q	T	I	H	L	P	S	G	E	I	L	D	V	F	D	A	A	E	R	Y	Q	Q	A	G	L	P	L	I	V	L	A	G	K	E	Y	G	A	G	S	S	R	D	W	A	A	K	G	P	F	L	L	G	I	K	A
Template Known Secondary structure								T	T	T			T	T				T	T	T	T		.			S					T	T	T	T															T	T									S	S	B	T	B	S				T									T	T
Template Predicted Secondary structure																							.
Template SS confidence
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.		.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
		793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	E	S	F	E	R	I	H	R	S	N	L	I	G	M	G	I	L	P	L	E	F	P	Q	G	V	T	R	K	T	L	G	L	T	G	E	E	K	I	D	I	G	D	L	Q	N	L	Q	P	G	A	T	V	P	V	T	L	T	R	A	D	G	S	Q	E	V	V	P	C	R	C	R	I	D	T	A	T	E
Query Conservation
Alig confidence																																																																	.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		V	L	A	E	S	Y	E	R	I	H	R	S	N	L	V	G	M	G	V	I	P	L	E	Y	L	P	G	E	N	A	D	A	L	G	L	T	G	Q	E	R	Y	T	I	I	I	P	E	N	L	K	P	Q	M	K	V	Q	V	K	L	D	T	G	K	.	.	.	.	T	F	Q	A	V	M	R	F	D	T	D	V	E
Template Known Secondary structure					S		B											T	T								T	T							T			S		S								S	S			T	T								T	T	S		.	.	.	.										S
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.					.	.	860	.	.	.	.	.	.	.	.	.	870
		873	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	Y	Y	Q	N	D	G	I	L	H	Y	V	I	R	N	M	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	Y	F	L	N	G	G	I	L	N	Y	M	I	R	K	M	A	K
Template Known Secondary structure								T	S
Template Predicted Secondary structure
Template SS confidence
		871	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.