Job Description P0AAK4 Confidence 97.94% Date Thu Jan 5 11:13:09 GMT 2012 Rank 55 Aligned Residues 149 % Identity 14% Template c2h89B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound Resolution 2.40 Å

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		15	.	.	.	.	20									.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure								.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query Sequence		C	R	T	C	E	V	.	.	.	.	.	.	.	.	A	C	V	V	S	H	Q	E	N	.	.	.	.	.	.	Q	D	C	A	S	L	T	P	E	T	F	L	P	R	I	H	V	I	K	G	V	N	I	S	T	A	T	V	C	R	Q	C	E	D	A	P	C	A	N	V	C	P	N	G	A	I	S	R	D	K	G
Query Conservation								.	.	.	.	.	.	.	.										.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		C	G	S	C	A	M	N	I	A	G	G	N	T	L	A	C	T	K	K	I	D	P	D	L	S	K	T	T	K	I	Y	P	L	P	H	M	Y	V	V	K	D	L	V	P	D	L	S	N	F	Y	A	Q	Y	K	S	I	E	P	Y	L	K	K	K	D	E	S	K	Q	G	K	E	Q	Y	L	Q	S	I	E	D	R
Template Known Secondary structure		S		T	T					T	T					T	T	T	S	B					T	T	S							S	S	S						T	T													T	T			S				S			T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	H	V	M	Q	E	R	C	I	G	C	K	T	C	V	V	A	C	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	M	E	V	V	V	R	P	V	I	R	N	S	G	A	G	L	N	V	R	A	D	K	A	E	A	N	K	C	D	L	C	N	H	R	E	D	G	P	A	C	M	A
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		Q	K	L	D	G	L	Y	E	C	I	L	C	A	C	C	S	T	S	C	P	S	Y	W	W	N	G	D	K	Y	L	G	P	A	V	L	M	Q	A	Y	R	W	M	I	D	S	R	D	D	Y	T	E	E	R	L	A	Q	L	Q	D	P	F	S	L	Y	R	C	H	T	I	M	.	.	.	.	.	.	N	C	T	R
Template Known Secondary structure			T	T	T	T	T	T	T						T	T	G	G	G								T	T	T															S		T	T		S								T	T		S	T	T	T	T	T	T						.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	P	T	H	A	L	I	C	V	D	R	N	K	L	E	Q	L	S	A	E	K	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	C	P	K	G	L	N	P	G	K	A	I	A	E	I	K	K	M	M	A	T	Y	K	E
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions