Job Description P0AAK4 Confidence 99.59% Date Thu Jan 5 11:13:09 GMT 2012 Rank 10 Aligned Residues 131 % Identity 20% Template c2fugC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

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		14	.	.	.	.	.	20														.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																																													.											.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																													.											.	.	.	.	.
Query Sequence		G	C	R	T	C	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	V	V	S	H	Q	E	N	Q	D	C	A	S	L	T	P	E	T	F	L	P	R	I	H	V	I	K	G	V	N	I	S	T	A	T	V	C	R	Q	C	E	D	A	.	P	C	A	N	V	C	P	N	G	A	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																																													.											.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																													.											.	.	.	.	.
Template Conservation
Template Sequence		A	C	R	M	C	L	V	R	I	G	L	I	Q	W	Q	P	K	L	A	A	S	C	V	T	A	V	A	D	G	M	V	V	D	T	L	S	D	V	V	R	E	A	Q	A	G	M	V	E	F	T	L	L	N	H	P	L	D	C	P	T	C	D	K	G	G	A	C	E	L	Q	D	R	T	V	E	Y	G	L	Y	E
Template Known Secondary structure			S	T	T	S									B		S	S				T	T	T		B			T	T					S																			T					T	T	T		T	T	G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
																			75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	R	D	K	G	F	V	H	V	M	Q	E	R	C	I	G	C	K	T	C	V	V	A	C	P	Y	G	A	M	E	V	V	V	R	P	V	I	R	N	S	G	A	G	L	N	V	R	A	D	K	A	E	A	N	K	C	D	L	C	N	H	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.													.
Template Conservation																																																																		.	.	.													.
Template Sequence		K	L	P	V	Y	T	R	F	E	F	T	R	R	H	V	D	K	H	H	P	L	S	P	F	V	I	L	D	R	E	R	C	I	H	C	K	R	C	V	R	Y	F	E	E	V	P	G	D	E	V	L	D	F	I	E	R	G	V	H	T	F	I	G	T	.	.	.	M	D	F	G	L	P	S	G	F	S	G	N	.
Template Known Secondary structure						S					S											S	S	S	S	S					S															T	T								B	S		G	G	G		B				.	.	.	S	S	T	T			S	S			T		.
Template Predicted Secondary structure																																																																		.	.	.													.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	G	P	A	C	M	A	A	C	P	T	H	A	L	I
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	I	T	D	I	C	P	V	G	A	L	L
Template Known Secondary structure		.	.	.	.	.						S	S	S	S	S	B
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							226	.	.	.	230	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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