Job Description P76100 Confidence 99.96% Date Thu Jan 5 12:18:53 GMT 2012 Rank 4 Aligned Residues 288 % Identity 13% Template c3eh0C_ PDB info PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		K	Y	R	L	S	E	E	Q	R	A	F	S	Y	Q	E	D	G	T	K	K	N	V	L	L	R	Q	I	I	A	I	S	D	F	N	D	V	I	A	G	T	A	G	G	W	I	D	R	E	T	V	L	A	Q	E	G	.	N	C	W	I	Y	D	Q	N	A	I	A	F	G	G	A	V	I	S	G	N	T	R	I	T
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		E	L	H	G	D	G	D	I	V	I	T	G	V	A	S	M	Q	S	A	Q	T	G	H	I	T	F	M	V	N	P	K	Y	R	E	H	L	G	L	C	Q	A	S	A	V	V	M	T	Q	D	D	L	P	F	A	K	S	A	A	L	V	V	K	N	P	Y	L	T	Y	A	R	M	A	Q	I	L	D	T	T	P	Q
Template Known Secondary structure					S		S										T	T	T			T	T								G	G	G	G	T	T	G	G	G				S						S	T	T	G	G	G		S	S						S													T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																									.
Query SS confidence																			.																									.
Query Sequence		G	T	S	V	L	W	G	E	V	Y	A	T	D	N	V	W	I	.	D	N	S	E	I	S	Q	G	A	Y	I	S	D	S	V	T	I	H	D	S	L	V	Y	G	.	Q	C	R	I	F	G	H	A	L	I	D	Q	H	S	M	I	V	A	A	Q	G	L	T	P	D	H	Q	L	L	L	Q	I	Y	D	R	A	R
Query Conservation																			.																									.
Alig confidence																			.																									.																											.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		P	A	Q	N	I	A	P	S	A	V	I	D	A	T	A	K	L	G	N	N	V	S	I	G	A	N	A	V	I	E	S	G	V	E	L	G	D	N	V	I	I	G	A	G	C	F	V	G	K	N	S	K	I	G	A	G	S	R	L	W	A	N	V	T	I	Y	H	E	I	.	.	.	.	Q	I	G	Q	N	C	L
Template Known Secondary structure		S		S	S	B		T	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T		.	.	.	.				S	S
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	S	R	I	V	H	Q	A	Q	I	Y	G	D	A	V	V	R	Y	A	F	I	E	H	R	A	E	V	F	D	F	A	S	I	E	G	N	E	E	N	N	V	W	L	C	D	C	A	K	V	Y	G	H	A	Q	V	K	A	G	I	E	E	D	A	I	P	T	I	H	Y	S	S	Q	V	A	E	Y	A	I
Query Conservation
Alig confidence											.															.	.
Template Conservation											.															.	.
Template Sequence		I	Q	S	G	T	V	V	G	A	.	D	G	F	G	Y	A	N	D	R	G	N	W	V	K	.	.	I	P	Q	I	G	R	V	I	I	G	D	R	V	E	I	G	A	C	T	T	I	D	R	G	A	L	D	D	T	I	I	G	N	G	V	I	I	D	N	Q	C	Q	I	A	H	N	V	V	I	G	D	N	T	A
Template Known Secondary structure				T	T						.									T	T					.	.											S	S					T	T							S	S	S						T	T					T	T					T	T					T	T
Template Predicted Secondary structure											.															.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	E	G	N	C	V	L	K	H	H	V	L	V	G	G	N	A	V	V	R	G	G	P	I	L	L	D	E	H	V	V	I	Q	G	E	S	R	I	T	G	A	V	I	I	E	N	H	V	E	L	T	D	H	A	V	V	E	A	F	D	G	D	T	V	H	V	R	.	G	P	K	V	I	N	G	E	E	R
Query Conservation																																																																					.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	G	G	V	I	M	A	G	S	L	K	I	G	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	M	I	G	G	A	S	V	I	N	G	H	M	E	I	C	D	K	V	T	V	T	G	M	G	M	V	M	R	P	I	T	E	P	G	V	Y	S	S	G	I	P	L
Template Known Secondary structure				T	T					T	T					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T					S	S					S	S					T	T					S		B		S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.																				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions