|   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
. | . | . | |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . |  |  |  | . |  |  |  |  |  |  |
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | K | R | T | K | F | R | K | M | H | K | G | R | N | R | G | L | A | Q | G | T | D | V | . |
. |
. |
. |
S | F | G | . |
S | F | G | L | K | A | V | G | R | G | R | L | T | A | R | Q | I | E | A | A | R | R | A | M | T | R | A | V | K | R | . |
. |
. |
. |
. |
. |
Q | G | K | I | W | I | R | V | F | P | D | K | P |
Query Conservation |   |
|
|   |   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
| . | . | . | . |   |   |
| . |   |
|
|
|   |
|   |   |   |
|   |
|   |   |   |
|
|
|
|
|
|   |   |
|   |
|   |
|
|
| . | . | . | . | . | . |   |   |   |   |
|
|
|
|   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
Template Sequence |   |
T | R | R | E | Y | I | T | G | I | P | G | S | K | I | A | Q | H | K | M | G | R | K | Q | K | D | A | D | D | Y | P | V | Q | I | S | L | I | V | E | E | T | V | Q | L | R | H | G | S | L | E | A | S | R | L | S | A | N | R | H | L | I | K | E | L | G | E | E | G | D | Y | K | M | T | L | R | K | F | P | H | Q | V |
Template Known Secondary structure |   |
|
| T | T | S |
|
|
|
|
|
|
|
|
|
|
| S |  |  |  |
| T | T | S |
| G | G | G |
| S |  |  |  |  |  |  |  | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
| S |
|  |  |  |  |
|
|
|
|
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |
  |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | T | E | K | P | L | A | V | R | M | G | K | G | K | G | N | V | E | Y | W | V | A | L | I | Q | P | G | K | V | L | Y | E | M | D | G | . |
. |
V | P | E | E | L | A | R | E | A | F | K | L | A | A | A | K | L | P | I | K | T | T | F |
Query Conservation |   |
|
|
|
|   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|
|
|
|   |   | . | . |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   | . | . |   |   |
|
|
|   |
|
|
|
|
|   |   |   |
|
|
|
|
|   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |
|
|
|   |   |   |
|
|
Template Sequence |   |
L | R | E | N | . |
. |
K | D | G | M | R | A | A | F | G | K | I | V | G | T | A | A | R | V | Q | A | G | E | Q | L | F | T | A | Y | C | N | V | E | D | A | E | H | V | K | E | A | F | R | R | A | Y | N | K | I | T | P | S | C | R | I |
Template Known Secondary structure |   |
 |  |  |
| . | . |
|
|
| S | T | T |
|
|
|  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |
| S | T | T |  |  |  |  |  |  |  |  |  |  |  | G | G | G | S | S | S |
|  |  |
|
Template Predicted Secondary structure |   |
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
95 | . | . | . | |
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
  |