Job Description P04825 Confidence 99.86% Date Thu Jan 5 10:58:23 GMT 2012 Rank 14 Aligned Residues 373 % Identity 12% Template c3rjoA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of erap1 peptide binding domain Resolution 2.30 Å

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		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	I	V	T	V	K	D	D	Y	N	P	E	T	E	Q	Y	T	L	T	I	S	Q	R	T	P	A	T	P	D	Q	A	E	K	Q	P	L	H	I	P	F	A	I	E	L	Y	D	N	E	G	K	V	I	P	L	Q	K	G	G	H	P	V	N	S	V	L	N	V	T	Q	A	E	Q	T	F	V	F	D	N
Query Conservation
Alig confidence														.	.	.	.	.	.											.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.											.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	P	L	I	T	I	T	V	R	G	R	.	.	.	.	.	.	N	V	H	M	K	Q	E	H	Y	M	.	.	.	.	.	.	.	Y	L	W	H	V	P	L	T	F	.	.	.	.	.	.	.	.	.	.	.	.	I	T	S	K	S	D	M	V	H	R	F	L	L	K	T	K	T	D	V	L	I	L	P	E
Template Known Secondary structure												T	T	.	.	.	.	.	.											.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.			S	S		S	S								S	S							S	S
Template Predicted Secondary structure														.	.	.	.	.	.											.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540							.	.	.	.	.	.	.	.	.	550								.	.	.	.	.	.	.	.	.													560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		V	Y	F	Q	P	V	P	A	L	L	C	E	F	S	A	P	V	K	L	E	Y	K	W	S	D	Q	Q	.	L	T	F	L	M	R	H	A	R	N	D	F	S	R	W	D	A	A	Q	S	L	L	A	T	Y	I	K	L	N	V	A	R	H	Q	Q	G	Q	P	L	S	L	P	V	H	V	A	D	A	F	R	A	V
Query Conservation																													.
Alig confidence					.	.																							.
Template Conservation					.	.
Template Sequence		E	V	E	.	.	W	I	K	F	N	V	G	M	N	G	Y	Y	I	V	H	Y	E	D	D	G	W	D	S	L	T	G	L	L	K	G	T	H	T	A	V	S	S	N	D	R	A	S	L	I	N	N	A	F	Q	L	V	S	I	G	K	L	S	I	E	K	A	L	D	L	S	L	Y	L	K	H	E	T	E	I	M
Template Known Secondary structure				S	.	.							S	S	S	S																						G	G	G	S																			T	S	S										G	G	G	G	G			S
Template Predicted Secondary structure					.	.
Template SS confidence
		594	.	.			.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		603	.																			.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	K	I	D	P	A	L	A	A	E	I	L	T	L	P	S	V	N	E	M	A	E	L	F	D	I	I	D	P	I	A	I	A	E	V	R	E	A	L	T	R	T	L	A	T	E	L	A	D	E	L	L	A	I	Y	N	A	N	Y
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	F	Q	G	L	N	E	L	I	P	M	Y	K	L	M	E	K	R	D	M	N	E	V	E	T	Q	F	K	A	F	L	I	R	L	L	R	D	L	I	D	K	Q	T	W	T	D	E	G	S	V	S	E	R	M	L	R	S	Q	L	L	L	L	A	C	V	H	N	Y	Q	P	C	V	Q	R	A	E	G	Y	F
Template Known Secondary structure																		T	T	S	S																									S	S			S																		T	T
Template Predicted Secondary structure
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.		.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		Q	S	E	Y	R	V	E	H	E	D	I	A	K	R	T	L	R	N	A	C	L	R	F	L	A	F	G	E	T	H	L	A	D	V	L	V	S	K	Q	F	H	E	A	N	N	M	T	D	A	L	A	A	L	S	A	A	V	A	A	Q	L	P	C	R	.	D	A	L	M	Q	E	Y	D	D	K	W	H	Q	N	G
Query Conservation																																																																		.
Alig confidence																											.	.																																						.
Template Conservation																											.	.
Template Sequence		R	K	W	K	E	S	N	G	N	L	S	L	P	V	D	V	T	L	A	V	F	A	V	G	A	.	.	Q	S	T	E	G	W	D	F	L	Y	S	K	Y	Q	F	S	L	S	S	T	E	K	S	Q	I	E	F	A	L	C	R	T	Q	N	K	E	K	L	Q	W	L	L	D	E	S	F	K	G	D	K	I	K	T
Template Known Secondary structure							T	T	T		S				G	G	G									T	.	.	T	S																												T	T		S															T	S	S	S		G
Template Predicted Secondary structure																											.	.
Template SS confidence
		752	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.			.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.		.	.	.	820	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		L	V	M	D	K	W	F	I	L	Q	A	T	S	P	A	A	N	V	L	E	T	V	R	G	L	L	Q	H	R	S	F	T	M	S	N	P	N	R	I	R	S	L	I	G	A	F	A	G	S	N	P	A	A	F	H	A	E	D	G	S	G	Y	L	F	L	V	E	M	L	T	D	L	N	.	S	R	N	P	Q	V
Query Conservation																																																																											.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																																					.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Sequence		Q	E	F	P	Q	I	L	T	L	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	P	.	V	G	Y	P	L	A	W	Q	F	L	R	K	N	W	N	K	L	V	Q	K	F	E	L	G	S	S	S	I	A	H	M	V	M	G	T	T	N	Q	F	S	T	R	T
Template Known Secondary structure		G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	T	.	T	T																					T	T											T	T	T	T			S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template SS confidence
		830	.	.	.	.	.	.	.	.	.	840																							.	.	.		.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.
		823	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	R	L	I	E	P	L	I	R	L	K	R	Y	D	A	K	R	Q	E	K	M	R	A	A	L	E	Q	L	K	G	L	E	N	L	S	G	D	L	Y	E	K	I	T	K	A	L
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		R	L	E	E	V	K	G	F	F	S	S	L	K	E	N	S	Q	L	R	C	V	.	Q	Q	T	I	E	T	I	E	E	N	I	G	W	M	D	K	N	F	D	K	I	R	V	W	L
Template Known Secondary structure												T	T	T	T								.
Template Predicted Secondary structure																							.
Template SS confidence
		887	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.		.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.