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Job DescriptionP04825
Confidence91.81%DateThu Jan 5 10:58:23 GMT 2012
Rank19Aligned Residues187
% Identity15%Templatec3nqzB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:secreted metalloprotease mcp02; PDBTitle: crystal structure of the autoprocessed vibriolysin mcp-02 with e369a2 mutation
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   223......230.........240.. .......250.........260.........270.........280.........290.........300.
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Query Sequence  APWAMTSLKNSMKWDEERFG. LEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFH
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Template Sequence  LNDAHFFGNVIFNMYNDWLGTAPLSFQLQMRVHYSSNYENAFWDGSAMTFGDGQNTFYPLVS. . . . . . . . LDVSAHEVSH
Template Known Secondary structure  SS
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   278.280.........290.........300.........310.........320.........330......... 340.........
 
   302.......310..... ....320.........330.........340.........350.........360..... ....
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Query Sequence  NWTGNRVTCRDWFQ. LSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIR. . . . . . . . . . . PDMV
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Template Sequence  GFTEQNSGLIYNGKPGGLNAAFSDMAGEAAEFYMKGSN. . . . . . . . . . . DWLVGKDIFKGNGALRYMNNPTQDGRSIDNQ
Template Known Secondary structure  TT


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STGGGBSSSS
STTSGGGGSS

SSG
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   350.........360.........370.........380....... ..390.........400.........410........
 
   370.. .......380.........390.........400.........410.........420.........
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Query Sequence  IEM. . . . NNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDAS
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Template Sequence  SNYYSGMDVHYSSGVYNKAFYNLATTPG. WDTQKAFIVMARANQLYWSAGVGWDLAGNGVMDAA
Template Known Secondary structure  GG

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   419420.........430.........440...... ...450.........460.........470.........480.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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