Job Description P04825 Confidence 54.04% Date Thu Jan 5 10:58:23 GMT 2012 Rank 56 Aligned Residues 151 % Identity 15% Template c3hjlA_ PDB info PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus Resolution 2.40 Å

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		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.				.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		T	H	L	A	D	V	L	V	S	K	Q	F	H	E	A	N	N	M	T	D	A	L	A	A	L	S	A	A	V	A	A	Q	L	P	C	R	D	A	L	M	Q	E	Y	D	D	K	W	H	Q	N	G	L	.	.	.	V	M	D	K	W	F	I	L	Q	A	T	S	P	A	A	N	V	L	E	T	V	R	G	L	L
Query Conservation																																																						.	.	.
Alig confidence																		.																																				.	.	.
Template Conservation																		.
Template Sequence		P	E	E	V	S	M	N	I	V	K	E	L	S	E	E	E	.	L	Q	K	L	F	A	L	A	K	D	L	E	S	V	P	E	E	E	I	E	N	I	A	E	E	L	L	D	E	I	K	K	A	G	I	K	I	K	K	P	E	E	F	I	E	N	I	K	K	V	I	P	P	T	L	A	E	K	F	R	G	I	L
Template Known Secondary structure													S					.										T																							T	T				S													S
Template Predicted Secondary structure																		.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.							.	.	.	.	.	.	.	.	840	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.
Query Sequence		Q	H	R	S	F	T	M	S	N	P	N	R	I	R	S	L	I	G	A	F	A	G	S	N	P	A	A	F	H	A	E	D	G	S	G	Y	L	F	L	V	E	M	L	T	D	L	N	S	R	N	P	Q	V	A	S	R	L	I	E	P	L	I	.	.	.	.	.	.	R	L	K	R	Y	D	A	K	R	Q	E	K
Query Conservation																																																																.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.								.	.	.																	.	.	.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.								.	.	.																																		.
Template Sequence		.	.	.	.	.	.	.	.	E	L	G	D	A	E	K	I	L	K	E	I	E	K	V	D	S	.	.	.	.	.	.	.	.	.	.	.	R	I	L	A	S	L	L	.	.	.	K	N	E	H	P	Q	T	I	A	L	F	L	S	Q	L	S	P	K	K	S	A	E	I	I	Q	N	L	P	E	E	L	K	K	.
Template Known Secondary structure		.	.	.	.	.	.	.	.														T	S			.	.	.	.	.	.	.	.	.	.	.								.	.	.	T	T	S										T	T	S											T	S							.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.								.	.	.																																		.
Template SS confidence
										101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.												.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		844	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	A	A	L	E	Q	L	K	G	L	E	N	L	S	G	D	L	Y	E	K	I	T	K	A	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	E	V	V	K	R	I	A	T	L	E	N	V	N	V	Q	Y	V	K	E	L	A	Q	I	L
Template Known Secondary structure		.	.										S
Template Predicted Secondary structure		.	.
Template SS confidence
				158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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