Job Description P04825 Confidence 28.24% Date Thu Jan 5 10:58:23 GMT 2012 Rank 88 Aligned Residues 60 % Identity 22% Template c2k9mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		808	.	810	.	.	.	.	.	.	.	.	.	820	.		.	.	.	.		.	.	.	.	830	.		.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.
Predicted Secondary structure																.					.							.
Query SS confidence																.					.							.
Query Sequence		L	V	E	M	L	T	D	L	N	S	R	N	P	Q	.	V	A	S	R	.	L	I	E	P	L	I	.	R	L	K	R	Y	D	A	K	R	Q	E	K	M	R	A	A	L	E	Q	L	K	G	L	E	N	L	S	G	D	L	Y	E	K	I	T	K
Query Conservation																.					.							.
Alig confidence																.					.							.
Template Conservation
Template Sequence		L	E	K	V	R	Q	K	V	L	R	L	E	P	L	G	V	C	S	K	D	V	W	E	F	L	E	L	Q	I	E	E	I	Y	P	E	E	E	E	I	L	K	K	A	L	R	D	L	K	R	G	K	K	L	K	P	E	I	K	G	K	L	S	R
Template Known Secondary structure											T	S	S	S			T	T	T	S		T	T										S		S	T	T														S													T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions