Job Description P04825 Confidence 100.00% Date Thu Jan 5 10:58:23 GMT 2012 Rank 3 Aligned Residues 859 % Identity 47% Template c2gtqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis Resolution 2.05 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	K	Y	R	H	D	Y	R	A	P	D	Y	Q	I	T	D	I	D	L	T	F	D	L	D	A	Q	K	T	V	V	T	A	V	S	Q	A	V	R	H	G	A	S	D	A	P	L	R	L	N	G	E	D	L	K	L	V	S	V	H	I	N	D	E	P	W	T	A	W	K	E	E	E	G	A	L	V	I	S	N
Query Conservation
Alig confidence																																										.											.
Template Conservation																																										.											.
Template Sequence		T	V	H	Y	L	K	D	Y	Q	T	P	A	Y	H	I	L	K	T	D	L	H	F	D	I	N	E	P	Q	T	V	V	K	S	R	L	T	V	E	P	Q	.	R	V	G	E	P	L	V	L	D	G	.	S	A	K	L	L	S	V	K	I	N	G	A	A	A	D	Y	V	L	E	G	E	T	L	T	I	A	G	V
Template Known Secondary structure						G	G	G					S														S	S													S	.	S	T	T	S							.		S								T	T									T	T					S
Template Predicted Secondary structure																																										.											.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	R	F	T	L	K	I	I	N	E	I	S	P	A	A	N	T	A	L	E	G	L	Y	Q	S	G	D	A	L	C	T	Q	C	E	A	E	G	F	R	H	I	T	Y	Y	L	D	R	P	D	V	L	A	R	F	T	T	K	I	I	A	D	K	I	K	Y	P	F	L	L	S	N	G	N	R	V	A	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	S	E	R	F	T	V	E	V	E	T	E	I	L	P	A	E	N	K	S	L	X	G	L	Y	A	S	G	G	N	L	F	T	Q	C	E	P	E	G	F	R	K	I	T	F	Y	I	D	R	P	D	V	X	S	K	F	T	T	T	I	V	A	D	K	K	R	Y	P	V	L	L	S	N	G	N	K	I	D	G	G
Template Known Secondary structure			S	S												G	G	G			S		S						T	T							T	T	T	T	G	G	G	T	S		B			S	T	T			B										T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	E	N	G	R	H	W	V	Q	W	Q	D	P	F	P	K	P	C	Y	L	F	A	L	V	A	G	D	F	D	V	L	R	D	T	F	T	T	R	S	G	R	E	V	A	L	E	L	Y	V	D	R	G	N	L	D	R	A	P	W	A	M	T	S	L	K	N	S	M	K	W	D	E	E	R	F	G	L	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	S	D	G	R	H	W	V	K	W	E	D	P	F	S	K	P	S	Y	L	F	A	L	V	A	G	D	L	A	V	T	E	D	Y	F	T	T	X	S	G	R	N	V	K	I	E	F	Y	T	T	E	A	D	K	P	K	V	G	F	A	V	E	S	L	K	N	A	X	K	W	D	E	T	R	F	G	L	E	Y
Template Known Secondary structure				T	T	S										S		B		G	G	G																		T	T	S											T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	I	Y	M	I	V	A	V	D	F	F	N	M	G	A	M	E	N	K	G	L	N	I	F	N	S	K	Y	V	L	A	R	T	D	T	A	T	D	K	D	Y	L	D	I	E	R	V	I	G	H	E	Y	F	H	N	W	T	G	N	R	V	T	C	R	D	W	F	Q	L	S	L	K	E	G	L	T	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	D	I	F	X	V	V	A	V	G	D	F	N	X	G	A	X	E	N	K	G	L	N	I	F	N	T	K	F	V	L	A	D	S	R	T	A	T	D	T	D	F	E	G	I	E	S	V	V	G	H	E	Y	F	H	N	W	T	G	N	R	V	T	C	R	D	W	F	Q	L	S	L	K	E	G	L	T	V	F
Template Known Secondary structure			S	S								S	S		S	S	S					T	T						G	G	G	T				T	T	T																			T	T	T	B	T	T	T	B			S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	Q	E	F	S	S	D	L	G	S	R	A	V	N	R	I	N	N	V	R	T	M	R	G	L	Q	F	A	E	D	A	S	P	M	A	H	P	I	R	P	D	M	V	I	E	M	N	N	F	Y	T	L	T	V	Y	E	K	G	A	E	V	I	R	M	I	H	T	L	L	G	E	E	N	F	Q	K	G	M	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	Q	E	F	S	G	D	R	A	S	R	A	V	R	R	I	E	N	I	R	L	L	R	Q	H	Q	F	P	E	D	A	G	P	T	A	H	P	V	R	P	A	S	Y	E	E	X	N	N	F	Y	T	X	T	V	Y	E	K	G	A	E	V	V	R	X	Y	H	T	L	L	G	E	E	G	F	Q	K	G	X	K
Template Known Secondary structure											S																							S	T	T				S	S		S			S		G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	F	E	R	H	D	G	S	A	A	T	C	D	D	F	V	Q	A	M	E	D	A	S	N	V	D	L	S	H	F	R	R	W	Y	S	Q	S	G	T	P	I	V	T	V	K	D	D	Y	N	P	E	T	E	Q	Y	T	L	T	I	S	Q	R	T	P	A	T	P	D	Q	A	E	K	Q	P	L	H	I	P	F
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		L	Y	F	Q	R	H	D	G	Q	A	V	T	C	D	D	F	R	A	A	X	A	D	A	N	G	I	N	L	D	Q	F	A	L	W	Y	S	Q	A	G	T	P	V	L	E	A	E	G	R	L	K	.	.	N	N	I	F	E	L	T	V	K	Q	T	V	P	P	T	P	D	X	T	D	K	Q	P	X	X	I	P	V
Template Known Secondary structure								T	T																	T				G	G	G	G							S												.	.	T	T													B	T	T	B	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		A	I	E	L	Y	D	N	E	G	K	V	I	P	L	Q	K	G	G	H	.	P	V	N	S	V	L	N	V	T	Q	A	E	Q	T	F	V	F	D	N	V	Y	F	Q	P	V	P	A	L	L	C	E	F	S	A	P	V	K	L	E	Y	K	W	S	D	Q	Q	L	T	F	L	M	R	H	A	R	N	D	F	S	R
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		K	V	G	L	L	N	R	N	G	E	A	V	A	F	D	Y	Q	G	K	R	A	T	E	A	V	L	L	L	T	E	A	E	Q	T	F	L	L	E	G	V	T	E	A	V	V	P	S	L	L	R	G	F	S	A	P	V	H	L	N	Y	P	Y	S	D	D	D	L	L	L	L	L	A	H	D	S	D	A	F	T	R
Template Known Secondary structure								T	T			B						S	S				S								S	S							B				S							S	T	T			S	S																				S
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	A	A	Q	S	L	L	A	T	Y	I	K	L	N	V	A	R	H	Q	Q	G	Q	P	L	S	L	P	V	H	V	A	D	A	F	R	A	V	L	L	D	E	K	I	D	P	A	L	A	A	E	I	L	T	L	P	S	V	N	E	M	A	E	L	F	D	I	I	D	P	I	A	I	A	E	V	R	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	E	A	A	Q	T	L	Y	R	R	A	V	A	A	N	L	A	T	L	S	D	G	V	E	L	P	K	H	E	K	L	L	A	A	V	E	K	V	I	S	D	D	L	L	D	N	A	F	K	A	L	L	L	G	V	P	S	E	A	E	L	W	D	G	A	E	N	I	D	P	L	R	Y	H	Q	A	R	E	A	L
Template Known Secondary structure																							T																				S	S	S									T									T	T	T		S	S	B
Template Predicted Secondary structure
Template SS confidence
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.				.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		T	R	T	L	A	T	E	L	A	D	E	L	L	A	I	Y	N	A	N	Y	Q	.	.	.	S	E	Y	R	V	E	H	E	D	I	A	K	R	T	L	R	N	A	C	L	R	F	L	A	F	G	E	T	H	L	A	D	V	L	V	S	K	Q	F	H	E	A	N	N	M	T	D	A	L	A	A	L	S	A	A	V
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		L	D	T	L	A	V	H	F	L	P	K	W	H	E	L	N	R	Q	A	A	K	Q	E	N	Q	S	Y	E	Y	S	P	E	A	A	G	W	R	T	L	R	N	V	C	R	A	F	V	L	R	A	D	P	A	H	I	E	T	V	A	E	K	Y	G	E	X	A	Q	N	X	T	H	E	W	G	I	L	S	A	V	N
Template Known Secondary structure									T																T	T			S																								T	T								T						S	S												T
Template Predicted Secondary structure
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	L	P	C	R	D	A	L	M	Q	E	Y	D	D	K	W	H	Q	N	G	L	V	M	D	K	W	F	I	L	Q	A	T	S	P	A	A	N	V	L	E	T	V	R	G	L	L	Q	H	R	S	F	T	M	S	N	P	N	R	I	R	S	L	I	G	A	F	A	G	S	N	P	A	A	F	H	A	E	D
Query Conservation
Alig confidence																																																																								.
Template Conservation																																																																								.
Template Sequence		G	N	E	S	D	T	R	N	R	L	L	A	Q	F	A	D	K	F	S	D	D	A	L	V	X	D	K	Y	F	A	L	V	G	S	S	R	R	S	D	T	L	Q	Q	V	R	T	A	L	Q	H	P	K	F	S	L	E	N	P	N	K	A	R	S	L	I	G	S	F	S	R	.	N	V	P	H	F	H	A	E	D
Template Known Secondary structure		T			S														T	T	T																	S	T	T									T	T	S	T	T			T	T														T	.						T		T	T
Template Predicted Secondary structure																																																																								.
Template SS confidence
		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.		790	.	.	.	.	.	.	.	.
		802	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	G	Y	L	F	L	V	E	M	L	T	D	L	N	S	R	N	P	Q	V	A	S	R	L	I	E	P	L	I	R	L	K	R	Y	D	A	K	R	Q	E	K	M	R	A	A	L	E	Q	L	K	G	L	E	N	L	S	G	D	L	Y	E	K	I	T	K	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	G	Y	R	F	I	A	D	K	V	I	E	I	D	R	F	N	P	Q	V	A	A	R	L	V	Q	A	F	N	L	C	N	K	L	E	P	H	R	K	N	L	V	K	Q	A	L	Q	R	I	R	A	Q	E	G	L	S	K	D	V	G	E	I	V	G	K	I	L
Template Known Secondary structure		S															T	T									G	G	G	G	T	T	G	G	G	B																	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		799	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.