Job Description P04825 Confidence 100.00% Date Thu Jan 5 10:58:23 GMT 2012 Rank 7 Aligned Residues 694 % Identity 19% Template c1z5hB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:tricorn protease interacting factor f3; PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum Resolution 2.30 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	I	T	D	I	D	L	T	F	D	L	D	A	Q	K	T	V	V	T	A	V	S	Q	A	V	R	H	G	A	S	D	A	P	L	R	L	N	G	E	D	L	K	L	V	S	V	H	I	N	D	E	P	W	T	A	W	K	E	E	E	G	A	L	V	I	S	N	L	P	E	R	F	T	L	K	I	I	N	E
Query Conservation
Alig confidence																													.	.	.																									.
Template Conservation																													.	.	.																									.
Template Sequence		M	E	V	E	K	Y	D	L	T	L	D	F	D	I	Q	K	R	T	F	N	G	T	E	T	I	T	A	.	.	.	D	A	G	D	I	V	L	D	A	V	G	L	Q	I	N	W	M	K	V	N	G	R	D	T	.	A	F	T	Y	D	G	Q	T	V	R	A	P	G	D	S	Q	P	Q	K	I	E	I	S	F	A
Template Known Secondary structure															T	T	T	T											.	.	.		S	S							S	S									T	T				.						S	S								S	S
Template Predicted Secondary structure																													.	.	.																									.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		I	S	P	A	A	N	T	A	L	E	G	L	Y	Q	S	G	D	.	.	.	A	L	C	T	Q	C	E	A	E	G	F	R	H	I	T	Y	Y	L	D	R	P	D	V	L	A	R	F	T	T	K	I	I	A	D	K	I	K	Y	P	F	L	L	S	N	G	N	R	V	A	Q	G	E	L	E	N	G	R	H	W	V
Query Conservation																			.	.	.
Alig confidence					.	.													.	.	.																																						.	.														.	.
Template Conservation					.	.																																																					.	.														.	.
Template Sequence		G	K	V	.	.	S	D	S	L	S	G	I	Y	Y	A	G	R	E	N	G	M	I	T	T	H	F	E	A	T	D	A	R	R	M	F	P	C	V	D	H	P	A	Y	K	A	V	F	A	I	T	V	V	I	D	K	D	Y	.	.	D	A	I	S	N	M	P	P	K	R	I	E	V	.	.	S	E	R	K	V	V
Template Known Secondary structure					.	.	B	S	S	S	S						S	S	T	T								T	T	T		G	G	G	T	S		B				T	T	S		B										T	T		.	.					S	S								.	.	S	S	S
Template Predicted Secondary structure					.	.																																																					.	.														.	.
Template SS confidence
		77	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	Q	D	P	F	P	K	P	C	Y	L	F	A	L	V	A	G	D	F	D	V	L	R	D	T	F	T	T	R	S	G	R	E	V	A	L	E	L	Y	V	D	R	G	N	L	D	R	A	P	W	A	M	T	S	L	K	N	S	M	K	W	D	E	E	R	F	G	L	E	Y	D	L	D	I	Y	M	I	V	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		E	F	Q	D	T	P	R	M	S	T	Y	L	L	Y	V	G	I	G	K	F	R	Y	E	Y	E	K	.	.	.	.	.	.	.	Y	R	D	I	D	L	I	L	A	S	L	K	D	I	R	S	K	Y	P	L	D	M	A	R	K	S	V	E	F	Y	E	N	Y	F	G	I	P	Y	A	L	P	K	M	H	L	I	S
Template Known Secondary structure								S	B		G	G	G															.	.	.	.	.	.	.		T	T								S	S			S																				S				S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	F	F	N	M	G	A	M	E	N	K	G	L	N	I	F	N	S	K	Y	V	L	A	R	T	D	T	A	T	D	K	D	Y	L	D	I	E	R	V	I	G	H	E	Y	F	H	N	W	T	G	N	R	V	T	C	R	D	W	F	Q	L	S	L	K	E	G	L	T	V	F	R	D	Q	E	F	S	S	D	L
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		V	P	E	F	G	A	G	A	M	E	N	W	G	A	I	T	F	R	E	I	Y	M	D	I	A	E	N	.	S	A	V	T	V	K	R	N	S	A	N	V	I	A	H	E	I	A	H	Q	W	F	G	D	L	V	T	M	K	W	W	N	D	L	W	L	N	E	S	F	A	T	F	M	S	Y	K	T	M	D	T	L
Template Known Secondary structure			T	T		T	T	S					T	T													T	T	.	S																		T	T	T	B	T	T	T				S	S	G	G	G
Template Predicted Secondary structure																													.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		G	S	R	A	V	N	R	I	N	N	V	R	T	M	R	G	L	Q	F	A	E	D	A	S	P	M	A	H	P	I	R	P	D	.	.	M	V	I	E	M	N	N	F	Y	T	L	T	V	Y	E	K	G	A	E	V	I	R	M	I	H	T	L	L	G	E	E	N	F	Q	K	G	M	Q	L	Y	F	E	R	H	D
Query Conservation																																			.	.
Alig confidence																																			.	.
Template Conservation
Template Sequence		F	P	E	W	S	F	W	G	D	F	F	V	S	R	T	S	G	A	L	R	S	D	S	L	K	N	T	H	P	I	E	V	D	V	R	D	P	D	E	I	S	Q	I	F	D	E	I	S	Y	G	K	G	A	S	I	L	R	M	I	E	D	Y	A	G	Y	E	E	F	R	K	G	I	S	K	Y	L	N	D	H	K
Template Known Secondary structure			T	T	S										T								T	T	S	S	S				S					S	S	S		T	T	S	S	S																																				T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		G	S	A	A	T	C	D	D	F	V	Q	A	M	E	D	A	S	N	V	D	L	S	.	H	F	R	R	W	Y	S	Q	S	G	T	P	I	V	T	V	K	D	D	Y	N	P	E	T	E	Q	Y	T	L	T	I	S	Q	R	T	P	A	T	P	D	Q	A	E	K	Q	P	L	H	I	P	F	A	I	E	L	Y	D
Query Conservation																								.
Alig confidence																								.																						.	.	.	.	.	.																.													.	.
Template Conservation																																														.	.	.	.	.	.																.													.	.
Template Sequence		F	G	N	A	E	G	S	D	L	W	T	A	I	E	D	V	S	G	K	P	V	K	R	V	M	E	Y	W	I	K	N	P	G	Y	P	V	I	K	L	K	R	N	G	R	.	.	.	.	.	.	K	I	T	M	Y	Q	T	R	F	L	L	N	G	E	E	.	E	G	R	W	P	V	P	V	N	I	K	K	.	.
Template Known Secondary structure		T																		S												S		S									S	T	T	.	.	.	.	.	.											T	T				.													.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.																.													.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.							.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	G	K	V	I	P	L	Q	K	G	G	H	P	V	N	S	V	L	N	V	T	Q	A	E	Q	T	F	V	F	D	N	V	Y	F	Q	P	V	P	A	L	L	C	E	F	S	A	P	V	K	L	E	Y	K	W	S	D	Q	Q	L	T	F	L	M	R	H	A	R	N	D	F	S	R	W	D	A	A	Q	S	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																																				.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																																				.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	K	D	G	V	E	R	I	L	L	E	D	E	A	S	.	.	.	.	.	.	I	E	A	D	G	L	I	K	I	N	A	D	S	A	G	F	Y	R	V	L	Y	D	D	A	T	F	S	D	V	M	G	H	Y	R	D	.	.	.	L	S	P	L	D	R	I	G	L	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	S								S	S				.	.	.	.	.	.				T	T					S	G	G	G		S	S	S													G	G	G	G	G	G	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																																				.	.	.
Template SS confidence
														454	.	.	.	.	.	460	.	.	.	.	.	.	.							.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.				.	.	.	.	.	.	.	510	.	.
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.							.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		L	A	T	Y	I	K	L	N	V	A	R	H	Q	Q	G	Q	P	L	S	L	P	V	H	V	A	D	A	F	R	A	V	L	L	D	E	K	I	D	P	A	L	A	A	E	I	L	T	L	P	S	V	N	E	M	A	E	L	F	D	I	I	.	.	.	.	.	.	D	P	I	A	I	A	E	V	R	E	A	L	T
Query Conservation																																																															.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	L	F	A	F	L	L	S	G	H	I	D	P	E	T	Y	R	Q	R	I	R	N	F	F	D	D	E	D	H	N	V	I	T	A	I	V	G	Q	M	E	Y	L	R	M	L	T	H	A	F	D	D	D	A	R	A	F	C	R	S	R	M	Q	F	L	T	G	K	Q	D	E	N	L	K	I	A	L	G	R	V
Template Known Secondary structure											T	S	S										G	G	G	T	T																			T	T		S	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	L	A	T	E	L	A	D	E	L	L	A	I	Y	N	A	N	Y	Q	S	E	Y	R	V	E	H	E	D	I	A	K	R	T	L	R	N	A	C	L	R	F	L	A	F	G	E	T	H	L	A	D	V	L	V	S	K	Q	F	H	E	A	N	N	M	T	D	A	L	A	A	L	S	A	A	V	A	A	Q	L
Query Conservation
Alig confidence																														.	.	.	.	.	.																.	.
Template Conservation																														.	.	.	.	.	.																.	.
Template Sequence		S	R	L	Y	V	M	V	D	E	S	Y	A	E	E	M	S	K	L	F	K	D	F	D	S	A	E	P	E	.	.	.	.	.	.	M	R	S	S	I	A	T	A	Y	A	L	V	T	G	D	.	.	L	K	G	L	L	E	K	F	R	S	V	D	R	D	E	D	R	V	R	I	I	S	A	F	G	K	L	K	S
Template Known Secondary structure																		G	G	G	G	G	T	T	T	S				.	.	.	.	.	.													T			.	.									T	T			S												T	T
Template Predicted Secondary structure																														.	.	.	.	.	.																.	.
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620							.	.	.	.	.	.	.	.	.	630	.	.	.	.	.			.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.		.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		P	C	R	D	A	L	M	Q	E	Y	D	D	K	W	H	Q	N	G	L	.	V	M	D	K	W	F	I	L	Q	A	T	S	P	A	A	N	V	L	E	T	V	R	G	L	L	Q
Query Conservation																					.
Alig confidence			.	.	.																.
Template Conservation			.	.	.
Template Sequence		N	.	.	.	T	D	L	S	T	V	Y	G	M	V	E	K	T	E	I	K	K	Q	D	M	I	S	F	F	S	S	A	L	E	T	L	P	G	R	E	F	I	F	A	N	L	D
Template Known Secondary structure			.	.	.												T	T	S	S		T	T	T									T	T	S										T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		665				.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.