Job Description P0A7R5 Confidence 99.98% Date Thu Jan 5 11:06:06 GMT 2012 Rank 5 Aligned Residues 96 % Identity 27% Template c2zkqj_ PDB info PDB header:ribosomal protein/rna Chain: J: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		R	I	R	I	R	L	K	A	F	D	H	R	L	I	D	Q	A	T	A	E	I	V	E	T	A	K	R	T	G	A	Q	V	R	G	P	I	P	L	P	T	R	K	E	R	F	T	V	L	I	S	P	H	V	N	.	K	D	A	R	D	Q	Y	E	I	R	T	H	L	R	L	V	D	I	V	E	P	T	E	K	T
Query Conservation																																																								.
Alig confidence																																																								.																					.
Template Conservation																																																																													.
Template Sequence		R	I	R	I	T	L	T	S	R	N	V	K	S	L	E	K	V	C	A	D	L	I	R	G	A	K	E	K	N	L	K	V	K	G	P	V	R	M	P	T	K	T	L	R	I	T	T	R	K	T	P	C	G	E	G	S	K	T	W	D	R	F	Q	M	R	I	H	K	R	L	I	D	L	H	S	.	P	S	E	I
Template Known Secondary structure			B							S	S																			S				S																S	S	S	S		T	T		T	T									B						B		S	.		T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	L	M	R	L	D	L	A	A	G	V	D	V	Q	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	Q	I	T	S	I	S	I	E	P	G	V	E	V	E	V	T
Template Known Secondary structure												S	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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