Job Description P22707 Confidence 3.44% Date Thu Jan 5 11:39:03 GMT 2012 Rank 73 Aligned Residues 51 % Identity 14% Template c2v4xA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain Resolution 1.5 Å

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		87	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																			.	.
Query SS confidence										.	.	.																			.	.
Query Sequence		L	F	D	G	D	T	P	R	.	.	.	L	L	A	C	G	I	R	D	V	L	L	E	D	V	A	Q	R	N	.	.	I	P	L	S	H	K	K	L	R	R	A	L	K	A	I	T	R	S	E	S	Y	L	C	A	M	K
Query Conservation										.	.	.																			.	.
Alig confidence										.	.	.																			.	.										.
Template Conservation																																										.
Template Sequence		V	F	E	N	N	N	Q	R	Y	Y	E	S	L	P	F	K	Q	L	K	E	L	K	I	A	C	S	Q	Y	G	P	T	A	P	F	T	I	A	X	I	E	.	N	L	G	T	Q	A	L	P	P	N	D	W	K	Q	T	A
Template Known Secondary structure						S	S																						T		T	T	S									.				T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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