Job Description P0A8E1 Confidence 99.84% Date Thu Jan 5 11:07:36 GMT 2012 Rank 11 Aligned Residues 177 % Identity 15% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.
Predicted Secondary structure													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		M	I	I	Y	L	H	G	F	D	S	N	.	.	.	S	P	G	N	H	E	K	V	L	Q	L	Q	F	I	D	P	D	V	R	L	I	S	Y	S	T	R	H	P	K	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	H	L	L	K	E	V	D	K	M	L	Q	L	.	.	N	V	D
Query Conservation													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		L	L	I	Q	V	Y	G	G	P	C	S	Q	S	V	R	S	V	F	A	V	N	W	I	S	Y	L	A	S	K	E	G	M	V	I	A	L	V	D	G	R	G	T	A	F	Q	G	D	K	L	L	Y	A	V	Y	R	K	L	G	V	Y	E	V	E	D	Q	I	T	A	V	R	K	F	I	E	M	G	F	I	D	E
Template Known Secondary structure										T	T	B																		T	T										T	T	B	S	S	S						G	G	G	T	T		T	T																T	T	S
Template Predicted Secondary structure
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.
Predicted Secondary structure																										.	.	.												.	.	.	.												.	.	.																				.
Query SS confidence																										.	.	.												.	.	.	.												.	.	.																				.
Query Sequence		E	R	P	L	I	C	G	V	G	L	G	G	Y	W	A	E	R	I	G	F	L	C	D	I	.	.	.	R	Q	V	I	F	N	P	N	L	F	P	.	.	.	.	Y	E	N	M	E	G	K	I	D	R	P	.	.	.	E	E	Y	A	D	I	A	T	K	C	V	T	N	F	R	E	K	N	R	.	D	R	C	L
Query Conservation																										.	.	.												.	.	.	.												.	.	.																				.
Alig confidence																										.	.	.												.	.	.	.												.	.	.																				.
Template Conservation
Template Sequence		K	R	I	A	I	W	G	W	S	Y	G	G	Y	V	S	S	L	A	L	A	S	G	T	G	L	F	K	C	G	I	A	V	A	P	V	S	S	W	E	Y	Y	A	S	V	Y	T	E	R	F	M	G	L	P	T	K	D	D	N	L	E	H	Y	K	N	S	T	V	M	A	R	A	E	Y	F	R	N	V	D	Y	L
Template Known Secondary structure										T											T	T	S	S	S			S						S					T	T	T	S	B											S	S	T	T	T	T							T		S	G	G	G	G	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.														.	.
Query SS confidence																									.	.	.	.	.	.														.	.
Query Sequence		V	I	L	S	R	N	D	E	A	L	N	S	Q	R	T	S	E	E	L	H	H	Y	Y	.	.	.	.	.	.	E	I	V	W	D	E	E	Q	T	H	K	F	K	.	.	N	I	S	P	H	L	Q	R	I	K	A	F	K
Query Conservation																									.	.	.	.	.	.														.	.
Alig confidence																									.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		L	I	H	G	T	A	D	D	N	V	H	F	Q	N	S	A	Q	I	A	K	A	L	V	N	A	Q	V	D	F	Q	A	M	W	Y	S	D	Q	N	H	G	L	S	G	L	S	T	N	H	L	Y	T	H	M	T	H	F	L
Template Known Secondary structure						T	T		S	S	S		T													T	T									T	T			T	T			T
Template Predicted Secondary structure
Template SS confidence
		696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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