Job Description P0A8E1 Confidence 99.79% Date Thu Jan 5 11:07:36 GMT 2012 Rank 31 Aligned Residues 177 % Identity 15% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.
Predicted Secondary structure													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		M	I	I	Y	L	H	G	F	D	S	N	.	.	.	S	P	G	N	H	E	K	V	L	Q	L	Q	F	I	D	P	D	V	R	L	I	S	Y	S	T	R	H	P	K	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	H	L	L	K	E	V	D	K	M	L	Q	L	.	.	N	V	D
Query Conservation													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T	K	L	L	H	E	V	R	R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y	I	D	R
Template Known Secondary structure										T	T											S								T	T										T	T		S	S	S							T	T	T	T		T	T	T															S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80					.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.
Predicted Secondary structure																							.	.	.	.					.	.	.																				.	.	.	.	.																						.
Query SS confidence																							.	.	.	.					.	.	.																				.	.	.	.	.																						.
Query Sequence		E	R	P	L	I	C	G	V	G	L	G	G	Y	W	A	E	R	I	G	F	L	.	.	.	.	C	D	I	R	.	.	.	Q	V	I	F	N	P	N	L	F	P	Y	E	N	M	E	G	K	I	D	.	.	.	.	.	R	P	E	E	Y	A	D	I	A	T	K	C	V	T	N	F	R	E	K	N	R	.	D	R
Query Conservation																							.	.	.	.					.	.	.																				.	.	.	.	.																						.
Alig confidence																							.	.	.	.					.	.	.																				.	.	.	.	.																						.
Template Conservation
Template Sequence		T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y	A	S	A	F	S	E	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	Q	Q
Template Known Secondary structure										T													S	S	S	T	T					S						S					T	T	S	S	B												S	S			S	S	T	T	T	S		T					T	S			S
Template Predicted Secondary structure
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																	.	.	.
Query SS confidence																											.	.	.	.	.	.																	.	.	.
Query Sequence		C	L	V	I	L	S	R	N	D	E	A	L	N	S	Q	R	T	S	E	E	L	H	H	Y	Y	.	.	.	.	.	.	E	I	V	W	D	E	E	Q	T	H	K	F	K	N	I	S	.	.	.	P	H	L	Q	R	I	K	A	F	K
Query Conservation																											.	.	.	.	.	.																	.	.	.
Alig confidence																											.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F
Template Known Secondary structure								T	T		S	S	S															T	T									T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions