Job Description P0AF08 Confidence 100.00% Date Thu Jan 5 11:24:49 GMT 2012 Rank 14 Aligned Residues 252 % Identity 17% Template c3ez6B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form Resolution 2.58 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		A	T	L	K	R	V	K	N	Q	P	G	I	N	G	V	K	N	I	I	A	V	S	S	G	K	G	G	V	G	K	S	S	T	A	V	N	L	A	L	A	L	A	.	.	.	.	.	.	A	E	G	A	K	V	G	I	L	D	A	D	I	Y	G	P	S	I	P	T	M	L	G	A	E	N	Q	R	P	T	S	P
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.															.
Template Conservation																																																																.
Template Sequence		Y	E	H	R	G	V	P	K	Y	R	D	R	Y	S	E	A	Y	V	I	F	I	S	N	L	K	G	G	V	S	K	T	V	S	T	V	S	L	A	H	A	M	R	A	H	P	H	L	L	M	E	D	L	R	I	L	V	I	D	L	D	P	Q	.	S	S	A	T	M	F	L	S	H	K	H	S	I	G	I	V	N
Template Known Secondary structure					T	T									S	S									S	S	S	S	S	S																T	T	T	G	G	G											T	T	.								S		T	T	T	T		S		S
Template Predicted Secondary structure																																																																.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
																		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	H	M	A	P	I	M	S	H	G	L	A	T	N	S	I	G	.	.	.	.	.	.	.	Y	L	V	T	D	D	N	A	M	V	W	R	G	P	M	A	S	K	A	L	M	Q	M	L	Q	E	T	L	W	P	D	L	D	Y	L	V	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	S	A	Q	A	M	L	Q	N	V	S	R	E	E	L	L	E	E	F	I	V	P	S	V	V	P	G	V	D	V	M	P	A	S	I	D	D	A	F	I	A	S	D	W	R	E	L	C	N	E	H	L	P	G	Q	N	I	H	A	V	L	K	E	N	V	I	D	K	L	K	S	D	Y	D	F	I	L	V	D
Template Known Secondary structure		S																			T					S	S	T	T								T	T							T									S	T	T	S		T	T	S						T					T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.										.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.
Query Sequence		M	P	P	G	T	G	D	I	Q	L	T	L	A	Q	N	I	P	V	T	G	A	V	V	V	T	T	P	Q	D	I	A	L	I	D	A	K	K	G	I	V	M	F	E	K	V	.	.	.	.	.	.	.	.	.	E	V	P	V	L	G	I	V	E	N	M	S	V	H	I	C	S	N	C	G	H	H	E	P	I	F
Query Conservation																																															.	.	.	.	.	.	.	.	.
Alig confidence								.	.																																						.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation								.	.																																																																			.	.	.	.	.	.
Template Sequence		S	G	P	H	L	D	.	.	A	F	L	K	N	A	L	A	S	A	N	I	L	F	T	P	L	P	P	A	T	V	D	F	H	S	S	L	K	Y	V	A	R	L	P	E	L	V	K	L	I	S	D	E	G	C	E	C	Q	L	A	T	N	I	G	F	M	S	K	L	S	N	K	A	D	H	.	.	.	.	.	.
Template Known Secondary structure				S			S	.	.											S								S	S												T	T											T	S																	S					.	.	.	.	.	.
Template Predicted Secondary structure								.	.																																																																			.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.										.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																			.																											.	.	.	.	.	.	.	.	.
Query SS confidence																			.																											.	.	.	.	.	.	.	.	.
Query Sequence		G	T	G	G	A	E	K	L	A	E	K	Y	H	T	Q	L	L	.	G	Q	M	P	L	H	I	S	L	R	E	D	L	D	K	G	T	P	T	V	I	S	R	P	E	S	.	.	.	.	.	.	.	.	.	E	F	T	A	I	Y	R	Q	L	A	D	R	V	A	A	Q	L
Query Conservation																			.																											.	.	.	.	.	.	.	.	.
Alig confidence		.																	.																											.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	K	Y	C	H	S	L	A	K	E	V	F	G	G	D	M	L	D	V	F	L	P	R	L	D	G	F	E	R	C	G	E	S	F	D	T	V	I	S	A	N	P	A	T	Y	V	G	S	A	D	A	L	K	N	A	R	I	A	A	E	D	F	A	K	A	V	F	D	R	I
Template Known Secondary structure		.												G	G	G	B		S	S														T	T			T	T	T	S		T	T	T		S	S
Template Predicted Secondary structure		.
Template SS confidence
			324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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