Job Description P0AF08 Confidence 99.06% Date Thu Jan 5 11:24:49 GMT 2012 Rank 55 Aligned Residues 205 % Identity 17% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	H	S	A	F	E	E	L	K	E	Q	C	S	A	E	L	L	R	I	T	G	A	K	A	I	D	W	K	L	S	H	N	I	A	T	L	K	R	V	K	N	Q	P	G	I	N	G	V	K	N	I	I	A	V	S	S	G	K	G	G	V	G	K	S	S	T	A	V	N	L	A	L	A	L	A	A	E	G	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		I	G	T	D	K	G	K	I	I	E	E	A	V	K	E	A	V	S	E	I	L	.	.	.	.	.	.	.	.	.	.	.	E	T	S	R	R	I	D	L	I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	.	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F
Template Known Secondary structure		T	T	S																		T	.	.	.	.	.	.	.	.	.	.	.			S											T	S		S								.			T	T	S	S															T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.												.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	G	I	L	D	A	D	I	Y	G	P	S	I	P	T	M	L	G	A	E	N	Q	R	P	T	S	P	D	G	T	H	M	A	P	I	M	S	H	G	L	A	T	N	S	I	G	Y	L	V	T	D	D	N	A	M	V	W	R	G	P	M	A	S	K	A	L	M	Q	M	L	Q	E	T	L	W	P	D	L	D
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	.	.	.	.	.	.	.	.	.	.	.	G	A	D	P	A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D
Template Known Secondary structure										T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T							S	T	.	.	.	.	.	.	.	.	.	.	.	T																		T		S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.															.	.	.	.	.	.	.	.	180	.	.	.	.	.	.												.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240							.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		Y	L	V	L	D	M	P	P	G	T	G	D	I	Q	L	T	L	A	Q	N	I	P	V	.	.	.	.	.	.	T	G	A	V	V	V	T	T	P	Q	D	I	A	L	I	D	A	K	K	G	I	V	M	F	E	K	V	E	V	P	V	L	G	I	V	E	N	M	S	V	H	I	C	S	N	C	G	H	H	E	P
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.										.																					.	.														.	.	.	.	.	.
Template Conservation																																								.																					.	.														.	.	.	.	.	.
Template Sequence		V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	.	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	.	.	G	I	I	L	T	K	L	D	A	D	A	R	G	.	.	.	.	.	.
Template Known Secondary structure									S	S			S	S	S																S								T	.	T		T	T	T												S				.	.						S	G	G	G		S	S		.	.	.	.	.	.
Template Predicted Secondary structure																																								.																					.	.														.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	G	T	G	G	A	E	K	L	A	E	K	Y	H	T	Q	L	L	G	Q
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	A	A	L	S	I	S	Y	V	I	D	A	P	I	L	F	V
Template Known Secondary structure		.	.	.	.											T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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