Job Description P0AF08 Confidence 99.36% Date Thu Jan 5 11:24:49 GMT 2012 Rank 50 Aligned Residues 179 % Identity 17% Template c3b9qA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana Resolution 1.75 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	V	K	N	Q	P	G	I	N	G	V	K	N	I	I	A	V	S	S	G	K	G	G	V	G	K	S	S	T	A	V	N	L	A	L	A	L	A	A	E	G	A	K	V	G	I	L	D	A	D	I	Y	G	P	S	I	P	T	M	L	G	A	E	N	Q	R	P	T	S	P	D	G	T	H	M	A	P	I	M
Query Conservation
Alig confidence																								.																																																		.	.	.	.	.	.	.	.
Template Conservation																								.																																																		.	.	.	.	.	.	.	.
Template Sequence		K	S	K	T	E	L	Q	L	G	F	R	K	P	A	V	I	M	I	V	G	V	N	.	G	G	G	K	T	T	S	L	G	K	L	A	H	R	L	K	N	E	G	T	K	V	L	M	A	A	G	D	T	F	R	A	A	A	S	D	Q	L	E	I	W	A	E	R	T	G	C	E	I	.	.	.	.	.	.	.	.
Template Known Secondary structure						S					S	S	S										T	.	T	S																T	T											S																T				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																																		.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.													240	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	G	L	A	T	N	S	I	G	Y	L	V	T	D	D	N	A	M	V	W	R	G	P	M	A	S	K	A	L	M	Q	M	L	Q	E	T	L	W	P	D	L	D	Y	L	V	L	D	M	P	P	G	T	G	D	I	Q	L	T	L	A	Q	N	I	P	.	.	.	.	.	.	.	.	.	.	.	.	V	T	G
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	A	E	K	A	K	A	A	T	V	L	S	K	A	V	K	R	G	K	E	E	G	Y	D	V	V	L	C	D	T	S	G	R	L	H	T	N	Y	S	L	M	E	E	L	I	A	C	K	K	A	V	G	K	I	V	S	G	A	P	N	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T	T		S										S	S																		T	T	S	T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	V	T	T	P	Q	D	I	A	L	I	D	A	K	K	G	I	V	M	F	E	K	V	E	V	P	V	L	G	I	V	E	N	M	S	V	H	I	C	S	N	C	G	H	H	E	P	I	F	G	T	G	G	A	E	K	L	A	E	K	Y	H	T	Q	L	L	G
Query Conservation
Alig confidence										.																				.	.														.	.	.	.	.	.	.	.
Template Conservation										.																				.	.														.	.	.	.	.	.	.	.
Template Sequence		I	L	L	V	L	D	G	N	.	T	G	L	N	M	L	P	Q	A	R	E	F	N	E	V	V	G	I	T	.	.	G	L	I	L	T	K	L	D	G	S	A	R	G	.	.	.	.	.	.	.	.	G	C	V	V	S	V	V	E	E	L	G	I	P	V	K	F	I	G
Template Known Secondary structure								G	G	.	G	G	G	G	G											T				.	.								S	S		S		T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																				.	.														.	.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.									.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions