Return to main results Retrieve Phyre Job Id

Job DescriptionP0AF08
Confidence100.00%DateThu Jan 5 11:24:49 GMT 2012
Rank15Aligned Residues228
% Identity18%Templatec2xj9B_
PDB info PDB header:replicationChain: B: PDB Molecule:mipz; PDBTitle: dimer structure of the bacterial cell division regulator mipz
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110.........120.........130.........140.........150.........160.........170.........180......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMSHGLATNSIGYL
Query Conservation     


 
 







 
 


  

  
  




 
     
    
                              
Alig confidence 

































































.........




Template Conservation 



 
   







 
  

  

  
  




 
                           .........    
Template Sequence  TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLALRQRTSARFFENRRAWLDNKKIELPEP. . . . . . . . . LALNL
Template Known Secondary structure 


SSTTSSTTT



TTT
T





.........
S
Template Predicted Secondary structure 






























.........

Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60......... 70....
 
   187..190.........200.........210.........220.........230.........240.........250.......
Predicted Secondary structure 

























.........
Query SS confidence 






































































. . . . . . . . .
Query Sequence  VTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDA. . . . . . . . .
Query Conservation                       
        
 



 


     
    
  

 



  
   
    .........
Alig confidence 









































..


























.........
Template Conservation                    
   
       
 



 
    ..     

  

 



   
  

            
Template Sequence  SDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDS. . AITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLE
Template Known Secondary structure  SS
TTS

S

SS

..T
SSS
SSS

Template Predicted Secondary structure 
















..






Template SS confidence 















































































   75....80.........90.........100.........110...... ...120.........130.........140.........150..
 
   258.260....... ..270.........280.........290.........300.........310.........320.....
Predicted Secondary structure  .......
.....


















Query SS confidence  . . . . . . .









. . . . .

























































Query Sequence  . . . . . . . KKGIVMFEKV. . . . . EVPVLGIVENMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDK
Query Conservation  .......          .....      

 
                                
  

 
  
  
   
Alig confidence  .......









.....






















....






























Template Conservation            
                 

 

            ....   
          
   
  
     
   
Template Sequence  LTKPSLYSLTVWEGRKQRALSGQAMDWVVLRNRLATTEARNRKRL. . . . EDRLNALAKRVGFRIGPGLRDRVIYRELFPF
Template Known Secondary structure 
TTSSS



SB
S

....T



B

GGGTTTGGG
Template Predicted Secondary structure 














....









Template SS confidence 















































































   153......160.........170.........180.........190....... ..200.........210.........220........
 
   326...330...... ...340.........
Predicted Secondary structure 






........
Query SS confidence 










. . . . . . . .












Query Sequence  GTPTVISRPES. . . . . . . . EFTAIYRQLADRV
Query Conservation 
 
     
 
........        

  
Alig confidence 










........












Template Conservation 
 

 

             
  
   
   
Template Sequence  GLTIADLSPQPVPVSLQHLAARQELRALMHSL
Template Known Secondary structure  T

GGGS







T
Template Predicted Secondary structure 








Template SS confidence 































   231........240.........250.........260..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions