Return to main results Retrieve Phyre Job Id

Job DescriptionP0AF08
Confidence100.00%DateThu Jan 5 11:24:49 GMT 2012
Rank2Aligned Residues225
% Identity41%Templatec2ph1A_
PDB info PDB header:ligand binding proteinChain: A: PDB Molecule:nucleotide-binding protein; PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130.........140.........150.........160..... ....170.........180..
Predicted Secondary structure 































.









Query SS confidence 





























































.
















Query Sequence  NGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSP. DGTHMAPIMSHGLATNS
Query Conservation        


 
 







 
 


  

  
  




 
     
    
         .                 
Alig confidence 





























































.
















Template Conservation      




 
 









  

  

  
  




 
     
                                
Template Sequence  GKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVXS
Template Known Secondary structure  TT
S

SSS
TTTT



SS

TT

S


TT

TTT


Template Predicted Secondary structure 












































Template SS confidence 















































































   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   183...... 190.........200.........210.........220.........230.........240.........250.........260.
Predicted Secondary structure 






.






















Query SS confidence 






.







































































Query Sequence  IGYLVTD. DNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGI
Query Conservation         .                  
        
 



 


     
    
  

 



  
   
        
Alig confidence 






.







































































Template Conservation                                     
 



              
  

 



               
Template Sequence  XQFLLPKENTPVIWRGPLIAGXIREFLGRVAWGELDHLLIDLPPGTGDAPLTVXQDAKPTGVVVVSTPQELTAVIVEKAI
Template Known Secondary structure  GGGGSTT
SS




SSB


S
S

SSSSS

S
SSS

Template Predicted Secondary structure 






























Template SS confidence 















































































   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   262.......270.........280.........290.........300.........310.........320........
Predicted Secondary structure 






















Query SS confidence 


































































Query Sequence  VMFEKVEVPVLGIVENMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTP
Query Conservation              

 
                                
  

 
  
  
   
 
Alig confidence 


































































Template Conservation              

 
                            
  

  

 
  
  
   
  
Template Sequence  NXAEETNTSVLGLVENXSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRI
Template Known Secondary structure  TTT

TT


TTT


TT



TT
S

B
TT
G
Template Predicted Secondary structure 




























Template SS confidence 


































































   175....180.........190.........200.........210.........220.........230.........240.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions