Job Description P0AF08 Confidence 97.98% Date Thu Jan 5 11:24:49 GMT 2012 Rank 64 Aligned Residues 153 % Identity 16% Template c2npiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex Resolution 2.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	I	I	A	V	S	S	G	K	G	G	V	G	K	S	S	T	A	V	N	L	A	L	A	L	A	A	E	G	.	A	K	V	G	I	L	D	A	D	I	Y	G	P	S	.	.	.	.	.	.	.	.	.	.	.	I	P	T	M	L	G	A	E	N	Q	R	P	T	S	P	D	G	T	H	M	A	P	I	M
Query Conservation																																.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																				.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		G	P	R	V	V	I	V	G	G	S	.	Q	T	G	K	T	S	L	S	R	T	L	C	S	Y	A	L	K	F	N	A	Y	Q	P	L	Y	I	N	L	D	P	Q	Q	P	I	F	T	V	P	G	C	I	S	A	T	P	I	S	D	I	L	D	A	Q	L	P	T	W	G	Q	S	L	T	S	G	A	T	L	L	H
Template Known Secondary structure										S	T	.	T	S	S															T	T											T	T	S		S	B	S		T	T									S				T	T		T	T		S	B	B			S	S			S	S
Template Predicted Secondary structure												.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.													.	.	.	.	.
Query SS confidence																																														.	.	.	.													.	.	.	.	.
Query Sequence		S	H	G	L	A	T	N	S	I	G	Y	L	V	T	D	D	N	A	M	V	W	R	G	P	M	A	S	K	A	L	M	Q	M	L	Q	E	T	L	W	P	D	L	D	Y	.	.	.	.	L	V	L	D	M	P	P	G	T	G	D	I	.	.	.	.	.	Q	L	T	L	A	Q	N	I	P	V	T	G	A	V	V
Query Conservation																																														.	.	.	.													.	.	.	.	.
Alig confidence																									.	.																				.	.	.	.													.	.	.	.	.
Template Conservation																									.	.
Template Sequence		N	K	Q	P	X	V	K	N	F	G	L	E	R	I	N	E	N	K	D	L	Y	L	E	.	.	C	I	S	Q	L	G	Q	V	V	G	Q	R	L	H	L	D	P	Q	V	R	R	S	G	C	I	V	D	T	P	S	I	S	Q	L	D	E	N	L	A	E	L	H	H	I	I	E	K	L	N	V	N	I	X	L	V
Template Known Secondary structure			B									S	S	S	G	G	G								.	.																						S									G	G	G	S		T	T											T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	P	Q	D	I	A	L	I	D	A	K	K	G	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	C	S	E	T	D	P	L	W	E	K	V	K	K	T	F	G
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions