Return to main results Retrieve Phyre Job Id

Job DescriptionP08660
Confidence100.00%DateThu Jan 5 11:01:34 GMT 2012
Rank8Aligned Residues287
% Identity35%Templated2hmfa1
SCOP infoCarbamate kinase-like Carbamate kinase-like PyrH-like
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20....... ..30.........40.........50........ .60.........70.......
Predicted Secondary structure 






...













....

Query SS confidence 






















. . .






























. . . .


















Query Sequence  VVSKFGGTSVADFDAMNRSADIV. . . LSDANVRLVVLSASAGITNLLVALAEGLEPG. . . . ERFEKLDAIRNIQFAILER
Query Conservation   
 






     
  
   
...       





  
 

 
          ....        
          
Alig confidence 






















...






























....


















Template Conservation   








 
      
   
          


 

  


  
                   
  
          
Template Sequence  TVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEE
Template Known Secondary structure 
TGGGSS
S



TTT

Template Predicted Secondary structure 





















Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   78.80.........90.. .......100.... .....110.........120.........130.........140..... ....150
Predicted Secondary structure 


.

.....







.



Query SS confidence 














.











. . . . .








































.




Query Sequence  LRYPNVIREEIERLL. ENITVLAEAAAL. . . . . ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV. MRTND
Query Conservation 
              .  
  
      .....       
 
 
 

  

 
 
  
   

 
  
     .
 
  
Alig confidence 














.











.....








































.




Template Conservation                
          
              
     

  

 
    
   

    
           
Template Sequence  AIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDN
Template Known Secondary structure 


T


TTT


TTTTT
S
Template Predicted Secondary structure 



















Template SS confidence 















































































   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   151........160.........170.........180.........190.........200.........210.........220.........230
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  RFGRAEPDIAALAELAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD
Query Conservation      
                      
 

 

 
    
   







 

  

  
 
    
 


 

 


Alig confidence 





















...






















































Template Conservation                 
   
  ...  



 



    
    



 

  

 

  
 
  
 
 


 

   
Template Sequence  NFGSARVKRLEVKERLLPLLKE. . . GIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTD
Template Known Secondary structure 
TTS


T...T
SS
TT



TTTT
SSSSS
BSS
Template Predicted Secondary structure 






...




























Template SS confidence 















































































   163......170.........180.... .....190.........200.........210.........220.........230.........
 
   231........240.........250.........260.........270.........280.........290....
Predicted Secondary structure 
































Query SS confidence 































































Query Sequence  PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE
Query Conservation 
  
  
  
  


 

 


  






 

 
     


 
 

  
   

 
     
Alig confidence 































































Template Conservation 

    
  
  

  

 

   
  



 

  
    


 
 
       

 
     
Template Sequence  PRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME
Template Known Secondary structure  TTT
TT

B
STT
TTS
GGGTT

TTSTTS

S


Template Predicted Secondary structure 



































Template SS confidence 































































   240.........250.........260.........270.........280.........290.........300...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions