 |
Job Description | P08660 | Confidence | 99.92% | Date | Thu Jan 5 11:01:34 GMT 2012 |
Rank | 32 | Aligned Residues | 138 |
% Identity | 29% | Template | c3mahA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:aspartokinase; |
PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83.
|
Resolution | 2.31 Å |
|
 |
  |   |
297 | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | L | F | R | A | L | A | L | R | R | N | Q | T | L | L | T | L | H | S | L | N | M | L | H | S | R | G | F | L | A | E | V | F | G | I | L | A | R | H | N | I | S | V | D | L | I | T | T | S | E | V | S | V | A | L | T | L | D | T | T | G | S | T | S | T | G | D | T | L | L | T | Q | S | L | L | M | E | L | S | A |
Query Conservation |   |
  |   |   |   |
|
|
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |   |
|   |   |   |   |
|   |
|
|   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|
|   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|
|
|
|   |
|
|   |
|   |   |   |
|
|   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
D | C | I | K | A | V | A | A | K | D | G | I | T | V | I | K | V | K | S | S | N | K | L | L | S | W | H | F | X | R | K | L | F | E | I | F | E | F | Y | Q | E | P | V | D | X | V | A | T | S | E | V | G | V | S | L | T | I | D | N | D | K | N | . |
. |
. |
. |
. |
. |
. |
. |
L | P | D | I | V | R | A | L | S | D |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| S |
|  |  |
|
| S | S |  |  |  |  |  |  | S |
|
| T | T | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
296 | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 360 | . | . | . | . | . | . | . |
  |
  |   |
377 | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | C | R | V | E | V | E | E | G | L | A | L | V | A | L | I | G | N | D | L | S | K | A | C | G | V | G | K | E | V | F | G | V | L | E | P | F | N | I | R | M | I | C | Y | G | A | S | S | H | N | L | C | F | L | V | P | G | E | D | A | E | Q | V | V | Q | K | L | H | S | N | L | F |
Query Conservation |   |
  |   |   |
|   |
|   |   |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
| . | . | . | . | . | . |   |
|
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |
|
|
|   |   |
|
|   |   |
|
|
Template Sequence |   |
I | G | D | V | T | V | D | K | D | X | V | I | I | C | I | V | G | . |
. |
. |
. |
. |
. |
V | G | F | E | A | R | I | I | N | A | L | K | G | V | P | V | R | X | I | S | Y | G | G | S | N | Y | N | V | S | V | L | V | K | A | E | D | K | K | K | A | L | I | A | L | S | N | K | L | F |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  | T | T | T | T | S |
|
| S |  |  |  |  |
| S | S | S | S |
|  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
368 | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|