 |
Job Description | P22525 | Confidence | 23.79% | Date | Thu Jan 5 11:38:56 GMT 2012 |
Rank | 35 | Aligned Residues | 33 |
% Identity | 24% | Template | c2r5iL_ |
PDB info |
PDB header:viral protein | Chain: L: PDB Molecule:l1 protein; |
PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 18
|
Resolution | 3.40 Å |
|
  |   |
495 | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Y | K | F | N | M | P | S | S | E | A | I | Y | L | H | D | T | P | N | H | N | L | F | K | R | D | T | R | A | L | S | S | G | C | V | R | V | N |
Query Conservation |   |
  |
|
|
|   |
|
|
|   |   |   |
|
|
|
|
|
|
|   |
|   |
|
|   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|   |   |   |   |
|
|
|
|   |
|
|
|
|   |   |   |
|
|
|
Template Sequence |   |
R | V | Q | L | P | D | P | N | K | F | G | L | . |
. |
. |
. |
. |
P | D | T | S | I | Y | N | P | E | T | Q | R | L | V | W | A | C | A | G | V | E |
Template Known Secondary structure |   |
 |  |  |
|
|
| S | S | S | S |
|
| . | . | . | . | . | S |
| S |
| S | S |
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|