Job Description P22525 Confidence 15.81% Date Thu Jan 5 11:38:56 GMT 2012 Rank 61 Aligned Residues 121 % Identity 12% Template c2plyB_ PDB info PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Resolution 2.60 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	Q	Y	A	A	M	H	E	S	L	L	A	L	L	C	D	T	K	P	W	P	Q	L	T	G	K	A	T	L	R	P	G	Q	W	S	N	D	V	P	A	L	R	E	I	L	Q	R	T	G	M	L	D	G	G	P	K	I	T	L	P	G	D	D	T	P	T	D	A	V	V	S	P	S	A	V	T	V	E	T
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	T	Q	K	K	L	L	K	D	L	E	D	K	Y	R	V	S	R	W	Q	P	P	W	V	K	E	V	A	G	S	F	N	L	D	P	S	E	L	E	E	L	L	H	Y	L	V	R	E	G	V	L	V	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																				T	T	S											T	T																	T	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	T	K	P	M	D	K	Q	T	T	S	R	S	K	P	A	P	A	V	R	A	A	Y	D	N	E	L	V	E	A	V	K	R	F	Q	A	W	Q	G	L	G	A	D	G	A	I	G	P	A	T	R	D	W	L	N	V	T	P	A	Q	R	A	G	V	L	A	L	N	I	Q	R	L	R	L	L	P	T	E	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	E	F	Y	W	H	R	Q	A	L	G	E	A	R	E	.	V	I	K	N	.	L	A	S	T	G	P	F	G	L	A	E	A	R	D	A	L	G	S	S	R	K	Y	V	L	P	L	L	E	Y	L	D	Q	V	K	F	T	R	R	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S														.					.			T	T	S		B										T																T	T	S					T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.
Template SS confidence
																				567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.		.	.	.	.		.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
		374	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	G	I	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	R	V	V	V
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		627	.	.	630	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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