Job Description P0ADH5 Confidence 99.89% Date Thu Jan 5 11:21:00 GMT 2012 Rank 6 Aligned Residues 174 % Identity 18% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	N	K	A	D	N	K	K	R	N	F	L	T	H	S	E	I	E	S	L	L	K	A	A	N	T	G	P	H	A	A	R	N	Y	C	L	T	L	L	C	F	I	H	G	F	R	A	S	E	I	C	R	L	R	I	S	D	I	D	L	K	A	K	C	I	Y	I	H	R	L	K	K	G	F	S	T	T	H	P
Query Conservation
Alig confidence																														.	.																																													.
Template Conservation																														.	.																																													.
Template Sequence		T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	.	.	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L	Y	V	E	Q	S	K	T	G	V	K	.	I	A	I	P	T
Template Known Secondary structure		S									B															T	T	S	S	.	.																						T	T		B	G	G	G			T	T							T	T	T				.					T
Template Predicted Secondary structure																														.	.																																													.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		L	L	N	K	E	V	Q	A	L	K	N	W	L	S	I	R	T	S	Y	P	H	A	E	S	E	W	V	F	L	S	R	K	G	N	P	L	S	R	Q	Q	F	Y	H	I	I	S	T	S	G	G	N	A	G	L	S	.	.	.	L	E	I	H	P	H	M	L	R	H	S	C	G	F	A	L	A	N	M	G	I	D
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.											.
Template Conservation																																																																						.
Template Sequence		A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S
Template Known Secondary structure		T				T	T	T	T														T		S	S	B	S	S			T	T	S																				T				S	S	B				T	T					.										T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	I	Q	D	Y	L	G	H	R	N	I	R	H	T	V	W	Y	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D
Template Known Secondary structure										T		S	S					T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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