Job Description P0ADH5 Confidence 15.71% Date Thu Jan 5 11:21:00 GMT 2012 Rank 40 Aligned Residues 107 % Identity 18% Template c1a31A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex Resolution 2.10 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50													.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		Y	C	L	T	L	L	C	F	I	H	G	F	R	A	S	E	.	.	.	.	.	.	.	.	.	.	.	.	I	C	R	L	R	I	S	D	I	D	L	K	A	.	.	.	.	.	.	K	C	I	Y	I	H	R	L	K	K	G	F	S	T	T	H	P	L	L	N	K	E	V	Q	A	L	K	N	W	L	S	I	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	I	R	Y	Y	N	K	V	P	V	E	K	R	V	F	K	N	L	Q	L	F	M
Template Known Secondary structure																					T	T	T	S						G	G	G		B	G	G	G								T	T												G	G	G																				T	T
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	Y	P	H	A	E	S	E	W	V	F	L	S	R	K	G	N	P	L	S	R	Q	Q	F	Y	H	I	I	S	T	S	G	G	N	A	G	L	S	L	E	I	H	P	H	M	L	R	H	S	C	G	F	A	L	A	N	M
Query Conservation
Alig confidence												.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		E	N	K	Q	P	E	D	D	L	F	.	.	.	.	.	.	.	D	R	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	.	.	.	.	.	.	E	G	L	T	A	K	V	F	R	T	Y	N	A	S	I	T	L	Q	Q
Template Known Secondary structure		T	T			T	T	S	B	T	T	.	.	.	.	.	.	.	T	T														S	.	.	.	.	.	.	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		556	.	.	.	560	.	.	.	.	.								.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.							.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions