Return to main results Retrieve Phyre Job Id

Job DescriptionP0ADH5
Confidence99.88%DateThu Jan 5 11:21:00 GMT 2012
Rank7Aligned Residues187
% Identity19%Templatec1a0pA_
PDB info PDB header:dna recombinationChain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20......... 30.........40.........50.........60.........70.........
Predicted Secondary structure 
















.






















Query SS confidence 




























.

















































Query Sequence  MKNKADNKKRNFLTHSEIESLLKAANTGP. HAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTH
Query Conservation   


        

  
   

       .   
      
   

 
  

  
   

        
           
Alig confidence 




























.

















































Template Conservation                                              

 
                                
Template Sequence  FREDDPSAHLKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP
Template Known Secondary structure  SSSS
TTS






S
TTS


TT
BGGGTTTT
SSS
Template Predicted Secondary structure 









































Template SS confidence 















































































   91........100.........110.........120.........130.........140.........150.........160.........170
 
   80.........90... ......100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 



..
































Query SS confidence 













. .































































Query Sequence  PLLNKEVQALKNWL. . SIRTSYPHAESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGID
Query Conservation                ..                                               
  


 

     
  
Alig confidence 













..































































Template Conservation                                                                 
 



 

 
   
  
Template Sequence  LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGAD
Template Known Secondary structure 

TTT



BSSB
TTSSB

TT

GGG


SS
Template Predicted Secondary structure 









































Template SS confidence 















































































   181........190.........200.........210.........220.........230.........240.........250.........260
 
   158.160.........170.........180.........
Predicted Secondary structure 





Query SS confidence 































Query Sequence  TRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD
Query Conservation     
   


    

  
       
     
Alig confidence 











..

















Template Conservation     
   


 
..

  
 
     
 
  
Template Sequence  LRVVQMLLSDLS. . TTQIYTHVATERLRQLHQ
Template Known Secondary structure 
GGGSS





..
Template Predicted Secondary structure 

..


Template SS confidence 































   261........270.. .......280.........290
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions