Return to main results Retrieve Phyre Job Id

Job DescriptionP77748
Confidence98.73%DateThu Jan 5 12:32:29 GMT 2012
Rank43Aligned Residues248
% Identity17%Templated1w1oa1
SCOP infoFerredoxin-like FAD-linked oxidases, C-terminal domain Cytokinin dehydrogenase 1
Resolution1.7

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   282.......290.........300.........310 .........320.........330.........340.........350...
Predicted Secondary structure 








........

















Query SS confidence 




























. . . . . . . .










































Query Sequence  PKVRRLVNVKYDSFDSALRNAPFMVEARA. . . . . . . . LSVETVDSKVLNLAREDIVWHSVSELITDVPDQEMLGLNIVEF
Query Conservation 
         
     
      
    
........ 
 
  
                               
 

 
Alig confidence 




























........










































Template Conservation 
 


  

 
 
   
  


 

        




                

   
  
             
 

Template Sequence  PARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIE
Template Known Secondary structure 

S

B

B
S
SGGGTTSSS
TT
S
Template Predicted Secondary structure 







































Template SS confidence 















































































   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   354.....360.........370.........380.........390.........400.........410.........420.........430...
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  AGDDEALIDERVNALCARLDELIASHQAGVIGWQVCRELAGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLA
Query Conservation                                                  
                     
 


   
 
Alig confidence 


















........


















..































Template Conservation   
  

        

  
........          
  
 


 ..

   
  

  
 
  









 
 
 
Template Sequence  ATLNYAAVDQELASVLGTL. . . . . . . . SYVEGFAFQRDVAYAAFLD. . RVHGEEVALNKLGLWRVPHPWLNMFVPRSRIA
Template Known Secondary structure 

TT
........


TT
T..TT
SSS



GGG
Template Predicted Secondary structure 







........










..














Template SS confidence 















































































   332.......340.........350 .........360......... 370.........380.........390.........400.
 
   434.....440. ........450...... ...460.........470.........480.........490.......
Predicted Secondary structure  .



...............









Query SS confidence 







.














. . . . . . . . . . . . . . .








































Query Sequence  DYIAEFRA. LLDSHGLSYGMFGHV. . . . . . . . . . . . . . . DAGVLHVRPALDMCDPQQEILMKQISDDVVALTAKYGGLLW
Query Conservation          .             
 ...............  
 

                          
   


 
Alig confidence 







.














...............















..






















Template Conservation 

   
   
       
 




    

    
   


 


  


 

  ..   
   
  

     

    
Template Sequence  DFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSND. . LARLQEQNRRILRFCDLAGIQYK
Template Known Secondary structure  TTTTTTTS


S
GGGS
TTSS



SSS




..TT


Template Predicted Secondary structure 
































..




Template SS confidence 















































































   409410.........420.........430.........440.........450.........460... ......470.........480......
 
   498.500.........510.........520.........530....... ..540.
Predicted Secondary structure 

















.

Query SS confidence 







































.



Query Sequence  GEHGKGFRAEYSPAFFGEELFAELRKVKAAFDPHNRLNPG. KICP
Query Conservation   


 
 
        
      
  

   

  




.

  
Alig confidence 







































.



Template Conservation   

    
  

  


   
  
   
  


  





 

 
Template Sequence  TYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
Template Known Secondary structure  SS


SS

TT

S
GGG
S

Template Predicted Secondary structure 

























Template SS confidence 












































   490.........500.........510.........520.........530....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions