Job Description P77748 Confidence 100.00% Date Thu Jan 5 12:32:29 GMT 2012 Rank 4 Aligned Residues 453 % Identity 23% Template c3pm9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution Resolution 2.57 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		L	V	L	N	F	L	Q	E	L	E	Q	Q	G	F	T	G	D	T	A	T	S	Y	A	D	R	L	T	M	S	T	D	N	S	.	I	Y	Q	L	L	P	D	A	V	V	F	P	R	S	T	A	D	V	A	L	I	A	R	L	A	A	Q	E	R	Y	S	S	L	I	F	T	P	R	G	G	G	T	G	T	N	G
Query Conservation																																			.
Alig confidence																																			.																													.	.	.
Template Conservation																																																																.	.	.
Template Sequence		L	S	P	E	L	I	A	R	F	T	A	I	V	G	D	K	H	A	L	T	D	P	L	E	L	E	A	Y	I	T	E	E	R	N	L	Y	R	G	H	S	P	L	V	L	R	P	G	S	T	E	E	V	V	A	I	C	K	L	A	N	E	A	.	.	.	R	V	A	L	V	P	Q	G	G	N	T	G	L	V	G
Template Known Secondary structure																G	G	G				S									B		T	T				B				S							S															.	.	.	T							S	S	S			S	S	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		93	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		Q	A	L	N	.	.	Q	G	I	I	V	D	M	S	R	H	M	N	R	I	I	E	I	N	P	E	E	G	W	V	R	V	E	A	G	V	I	K	D	Q	L	N	Q	Y	L	K	P	F	G	Y	F	F	A	P	E	L	S	T	S	N	R	A	T	L	G	G	M	I	N	T	D	A	S	G	Q	G	S	L	V	Y
Query Conservation						.	.
Alig confidence						.	.										.
Template Conservation																	.
Template Sequence		G	Q	T	P	H	N	G	E	V	V	I	S	L	K	R	.	X	D	K	I	R	E	I	D	T	S	S	N	T	I	T	V	E	A	G	A	I	L	Q	R	V	Q	E	K	A	A	E	V	D	R	L	F	P	L	S	L	G	A	Q	G	S	C	T	I	G	G	N	L	S	T	N	A	G	G	T	A	A	L	A	Y
Template Known Secondary structure		T	T				S	S							T	T	.									T	T	T	T						T	T		B											T	T								T	T	T	T	T		B								T				T	T
Template Predicted Secondary structure																	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	S	D	H	V	L	G	V	R	A	V	L	L	G	G	D	I	L	D	T	Q	P	L	P	V	E	L	A	E	T	L	G	K	S	N	T	T	I	G	R	I	Y	N	T	V	Y	Q	R	C	R	Q	Q	R	Q	L	I	I	D	N	F	P	K	L	N	R	F	L	T	G	Y	D	L	R	H	V	F	N	D
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	A	R	D	X	A	L	G	V	E	V	V	L	A	D	G	R	V	X	N	L	L	S	K	L	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	T	S										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		E	M	T	E	F	D	L	T	R	I	L	T	G	S	E	G	T	L	A	F	I	T	E	A	R	L	D	I	T	R	L	P	K	V	R	R	L	V	N	V	K	Y	D	S	F	D	S	A	L	R	N	A	P	F	M	V	E	A	R	.	.	.	A	L	S	V	E	T	V	D	S	K	V	L	N	L	A	R	E	D
Query Conservation																																																													.	.	.
Alig confidence																																																													.	.	.																		.
Template Conservation																																																																																	.
Template Sequence		D	N	T	G	Y	D	L	R	D	L	F	I	G	A	E	G	T	L	G	I	I	T	A	A	T	L	K	L	F	P	K	P	R	A	V	E	T	A	F	V	G	L	Q	S	P	D	D	A	L	K	L	L	G	I	A	Q	G	E	A	A	G	N	L	T	S	F	E	L	I	A	E	T	P	L	D	F	S	V	R	.
Template Known Secondary structure				S	S								T	T	S	T	T	S	S															S										S																	G	G	G																		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	W	H	S	V	S	E	L	I	T	D	V	P	D	Q	E	M	L	G	L	N	I	V	E	F	A	G	D	D	E	A	L	I	D	E	R	V	N	A	L	C	A	R	L	D	E	L	I	A	S	H	Q	A	G	V	I	G	W	Q	V	C	R	E	L	A	G	V	E	R	I	Y	A	M	R	K	K	A	V	G
Query Conservation
Alig confidence		.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																										.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	H	A	N	N	R	D	P	L	E	A	R	Y	P	W	Y	V	L	I	E	L	S	S	P	R	D	D	A	R	A	A	L	E	S	I	L	E	R	G	F	E	D	.	.	.	.	.	.	G	I	V	V	D	A	A	I	A	N	S	V	Q	Q	Q	Q	A	F	W	K	L	R	E	E	I	S	P
Template Known Secondary structure		.	.	.	.	.	.		T	T					S	S	S			S										S	S	S																T	.	.	.	.	.	.	T										S													T
Template Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.	.	.	.
Template SS confidence
								275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.							.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.			.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.			.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																																								.	.																						.	.
Query SS confidence																																								.	.																						.	.
Query Sequence		L	L	G	N	A	K	G	A	A	K	P	I	P	F	A	E	D	T	C	V	P	P	E	H	L	A	D	Y	I	A	E	F	R	A	L	L	D	S	.	.	H	G	L	S	Y	G	M	F	G	H	V	D	A	G	V	L	H	V	R	P	A	.	.	L	D	M	C	D	P	Q	Q	E	I	L	M	K	Q	I	S	D
Query Conservation																																								.	.																						.	.
Alig confidence							.	.	.	.	.																													.	.																						.	.
Template Conservation							.	.	.	.	.
Template Sequence		A	Q	K	P	E	.	.	.	.	.	G	G	S	I	K	H	D	I	S	V	P	V	A	A	V	P	Q	F	I	E	Q	A	N	A	A	V	V	A	L	I	P	G	A	R	P	V	P	F	G	H	L	G	D	G	N	I	H	Y	N	V	S	Q	P	V	G	A	D	K	A	E	F	L	A	R	W	H	D	V	S	Q
Template Known Secondary structure			T	G	G	G	.	.	.	.	.												G	G	G																S	T	T									G	G	G	T										T	T								T	T
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		343	.	.	.	.						.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		D	V	V	A	L	T	A	K	Y	G	G	L	L	W	G	E	H	G	K	G	F	.	R	A	E	Y	S	P	A	F	F	G	E	E	L	F	A	E	L	R	K	V	K	A	A	F	D	P	H	N	R	L	N	P	G	K	I	C
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		V	V	F	E	V	V	L	R	L	G	G	S	I	S	A	E	H	G	I	G	V	X	K	R	D	E	L	A	E	V	K	D	K	T	A	I	E	L	X	R	S	I	K	A	L	L	D	P	H	G	I	X	N	P	G	K	V	V
Template Known Secondary structure										T	T		B	S		S	S	S			T	T	T	T								S																	T	T	S		B	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.