Job Description P77748 Confidence 99.59% Date Thu Jan 5 12:32:29 GMT 2012 Rank 34 Aligned Residues 222 % Identity 14% Template c3kwlA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori Resolution 1.94 Å

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		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	N	A	E	Q	K	A	R	T	V	L	V	V	Q	D	P	F	T	S	Y	Y	D	A	Q	V	V	A	D	F	V	R	L	V	E	K	L	G	F	Q	P	V	L	L	P	F	S	P	N	G	K	A	Q	H	I	K	G	F	L	N	R	F	A	K	T	A	K	K	T	A	D	F	L	N	R	M	A	K	L	G
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		P	P	K	T	P	N	P	P	K	T	C	A	L	F	N	A	Y	A	K	H	L	D	V	Q	S	L	L	K	S	A	K	L	Y	L	E	K	X	G	Q	K	T	I	D	L	P	F	C	Y	D	G	G	Y	Y	G	K	I	I	S	T	H	D	F	L	T	A	S	A	Y	N	L	A	L	A	K	A	N	G	V	S	.
Template Known Secondary structure									T	T										T	T	S																T	T													T	T	T																							T	T			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		859	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.																		.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	M	V	G	V	D	P	A	L	V	L	C	Y	R	D	E	Y	K	L	A	L	G	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	E	F	N	V	L	L	A	N	E	W	L	A	S	A	L	E	S	Q	P	V	A	T	V	S	G	E	S	W	Y	F	F	G	H	C	T	E
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	L	I	F	C	E	E	D	A	Y	L	N	I	L	H	A	K	E	V	L	D	N	N	P	E	I	I	N	S	V	N	E	K	L	K	K	Y	Q	L	V	Y	E	K	D	I	E	I	V	Y	L	N	E	W	V	N	E	F	L	A	W	E	L	K	S	P	F	D	A	F	V	G	A	E	F	S	R	I	K	Q
Template Known Secondary structure		.	.					S															T	T													G	G	G	T					S																	S				S			T	T		B						S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		922	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	T	A	L	P	G	A	P	A	Q	W	A	A	I	F	A	R	F	G	A	K	L	E	N	V	S	V	G	C	C	G	M	A	G	T	Y	G	H	E	A	K	N	H	E	N	S	L	G	I	Y	E	L	S	W	H	Q	A	M	Q	R	L	P	R	N	R	C	L	A	T	G	Y	S	C	R	S	Q	V	K	.	.
Query Conservation																																																																																.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																										.	.	.																		.																				.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.																										.	.	.																		.
Template Sequence		S	D	H	.	.	.	.	.	.	.	.	.	.	F	F	N	K	I	H	L	K	A	P	H	F	L	E	S	F	Q	N	Y	A	P	L	L	E	V	.	.	.	N	E	A	S	G	L	L	Q	C	A	H	L	R	Y	L	G	I	.	D	L	G	A	D	F	L	I	A	H	S	L	G	L	F	Y	A	F	E	N	L
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.						T		B					G	G	G	G				G	G	G	G	G	T	.	.	.																		.		T	T		S					S									T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																										.	.	.																		.
Template SS confidence
		382	.	.											.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.				410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
												1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	V	E	G	T	G	V	R	H	P	V	Q	A	L	L	E	I	I
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	K	A	S	K	I	Y	K	R	D	N	D	N	T	P	T	L	F	L	P	Q	I	A	L	X	A	X
Template Known Secondary structure							T	T	S		S																		T
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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